Results 31 to 40 of about 149,549 (240)

Metagenome sequencing of the microbial community of a solar saltern crystallizer pond at cáhuil lagoon, chile. [PDF]

, 2014
Cáhuil Lagoon in central Chile harbors distinct microbial communities in various solar salterns that are arranged as interconnected ponds with increasing salt concentrations.
Allen, Eric E, Astorga, Marcia, Bertoglio, Florencia, Blanchet, Marine, De la Iglesia, Rodrigo, Delgado, Yolaine, Delherbe, Nathalie, Docmac, Felipe, Elizondo-Patrone, Claudia, Gimpel, Carla, González, María Lorena, Gálvez, María Jesús, Hanselmann, Kurt, Henríquez-Castillo, Carlos, Ikeda, Priscila, Lopes do Santos, Adriana, Narváez, Silvia, Plominsky, Alvaro M, Rojas-Herrera, Marcelo, Santibañez, Francisco, Sorroche, Fernando, Trefault, Nicole, Ugalde, Juan A, Ulloa, Osvaldo, van den Engh, Gerrit, Vaulot, Daniel, von Dassow, Peter   +26 more
core   +4 more sources

Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom [PDF]

, 2020
© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bhatnagar, S., Cowley, E. S., Kopf, S. H., Pérez Castro, S., Kearney, S., Dawson, S. C., Hanselmann, K.
Bhatnagar, Srijak, Castro, Sherlynette Pérez, Cowley, Elise S, Dawson, Scott C, Hanselmann, Kurt, Kearney, Sean, Kearney, Sean Michael, Kopf, Sebastian H, Pérez Castro, Sherlynette, Ruff, S. E   +9 more
core   +1 more source

A database of animal metagenomes

Scientific Data, 2022
Measurement(s) Metagenome metadata Technology Type(s) Collection and integration the metagenomic information of multiple animal species Factor Type(s) animal Sample Characteristic - Organism animal Sample Characteristic - Environment metagenome Sample ...
Ruirui Hu, Rui Yao, Lei Li, Yueren Xu, Bingbing Lei, Guohao Tang, Haowei Liang, Yunjiao Lei, Cunyuan Li, Xiaoyue Li, Kaiping Liu, Limin Wang, Yunfeng Zhang, Yue Wang, Yuying Cui, Jihong Dai, Wei Ni, Ping Zhou, Baohua Yu, Shengwei Hu   +19 more
doaj   +1 more source

Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria [PDF]

, 2019
Marine sponges are early-branching, filter-feeding metazoans that usually host complex microbiomes comprised of several, currently uncultivatable symbiotic lineages.
Cox, Cymon, da Rocha, Ulisses N, da Silva Costa, Rodrigo, Hentschel, Ute, Karimi, Elham, Keller-Costa, Tina, Slaby, Beate M   +6 more
core   +4 more sources

Dissecting the role of the human microbiome in COVID-19 via metagenome-assembled genomes

Nature Communications, 2022
Here, using whole-metagenome shotgun sequencing data from patients with COVID-19 and controls, the authors reconstruct 11,584 microbial metagenome-assembled genomes (MAGs) including 5,403 non-redundant MAGs, revealing microbiota and metabolic pathways ...
Shanlin Ke, Scott T. Weiss, Yang-Yu Liu
doaj   +1 more source

Deconvolute individual genomes from metagenome sequences through short read clustering. [PDF]

, 2020
Metagenome assembly from short next-generation sequencing data is a challenging process due to its large scale and computational complexity. Clustering short reads by species before assembly offers a unique opportunity for parallel downstream assembly of
Deng, Li, Li, Kexue, Lu, Yakang, Shi, Lizhen, Wang, Lili, Wang, Zhong   +5 more
core  

Species-level functional profiling of metagenomes and metatranscriptomes. [PDF]

, 2018
Functional profiles of microbial communities are typically generated using comprehensive metagenomic or metatranscriptomic sequence read searches, which are time-consuming, prone to spurious mapping, and often limited to community-level quantification ...
A Sczyrba, A Shafquat, AE Duran-Pinedo, AK Sharma, B Buchfink, B Langmead, BE Suzek, BK Swan, C Burke, C Luo, Curtis Huttenhower, D Medini, DH Huson, DT Truong, DT Truong, E Pasolli, EA Franzosa, EA Franzosa, Eric A. Franzosa, George Weingart, GG Silva, Gholamali Rahnavard, H Hauswedell, J Kim, J Lloyd-Price, J Lloyd-Price, J Ravel, J. Gregory Caporaso, JA Fuhrman, K Huang, Karen Schwarzberg Lipson, Lauren J. McIver, LR Thompson, LR Thompson, Luke R. Thompson, M Hamady, M Kanehisa, M Scholz, Melanie Schirmer, MY Galperin, N Segata, N Segata, Nicola Segata, OU Mason, P Petrenko, PJ Turnbaugh, R Caspi, RC Edgar, RD Finn, Rob Knight, S Abubucker, S Nayfach, S Sunagawa, S Sunagawa, T Bose, UniProt Consortium., W Huang, Y Ye, Y Zhao   +58 more
core   +2 more sources

Anaerobic Carbon Monoxide Dehydrogenase Diversity in the Homoacetogenic Hindgut Microbial Communities of Lower Termites and the Wood Roach [PDF]

, 2011
Anaerobic carbon monoxide dehydrogenase (CODH) is a key enzyme in the Wood-Ljungdahl (acetyl-CoA) pathway for acetogenesis performed by homoacetogenic bacteria.
A Brauman, A Ebert, A Marchler-Bauer, B Soboh, BJ Paster, CL Drennan, CL Drennan, CM Perez, DA Odelson, DM Bodenmiller, E Matson, E Oelgeschläger, E Pezacka, E Pierce, EG Matson, EJ Gagen, Eric G. Matson, F Warnecke, FH Martin, GM King, H Dobbek, HJ Beaumont, HL Drake, HL Drake, HL Drake, HL Drake, J Heo, J Heo, JA Breznak, JA Breznak, Jared R. Leadbetter, JG Ferry, JM González, JR Graber, JR Graber, JR Leadbetter, K Fujinaga, Kasia G. Gora, KH Yeoman, M Köpke, M Pester, M Wu, MA Larkin, MD Kane, R Overbeek, RE Hungate, RL Kerby, S Huang, S Kambhampati, SF Altschul, SW Ragsdale, SW Ragsdale, SW Ragsdale, SW Singer, T Beckwith, TG Lilburn, TI Doukov, TM Salmassi, V Svetlitchnyi, V Svetlitchnyi, Vasu D. Appanna, W Ludwig, X Zhang   +62 more
core   +3 more sources

Enterobacteriaceae and Bacteroidaceae provide resistance to travel-associated intestinal colonization by multi-drug resistant Escherichia coli

Gut Microbes, 2022
Previous studies have shown high acquisition risks of extended-spectrum beta-lactamase-producing Enterobacteriaceae (ESBL-E) among international travelers visiting antimicrobial resistance (AMR) hotspots.
Matthew Davies, Gianluca Galazzo, Jarne M. van Hattem, Maris S. Arcilla, Damian C. Melles, Menno D. de Jong, Constance Schultsz, Petra Wolffs, Alan McNally, Willem van Schaik, John Penders   +10 more
doaj   +1 more source

Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust. [PDF]

, 2019
Biological soil crusts (biocrusts) are photosynthetic "hot spots" in deserts and cover ∼12% of the Earth's terrestrial surface, and yet they face an uncertain future given expected shifts in rainfall events.
Northen, Trent R, Roux, Simon, Swenson, Tami L, Trubl, Gareth, Van Goethem, Marc W   +4 more
core   +2 more sources