Results 1 to 10 of about 145,509 (229)
UMGAP: the Unipept MetaGenomics Analysis Pipeline [PDF]
BMC Genomics, 2021 Abstract Background Shotgun metagenomics yields ever richer and larger data volumes on the complex communities living in diverse environments. Extracting deep insights from the raw reads heavily depends on the availability of fast, accurate and user-friendly biodiversity analysis tools.
Felix Van der Jeugt +6 more
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Fungal Distribution in Traditional Meju and Characterization of Isolated Strains [PDF]
한국균학회지, 2023 This study was conducted to analyze the distribution and characteristics of fungal species in meju using the traditional method. Fungal distribution in meju was investigated using metagenomic and morphological analyses, based on which Aspergillus flavus ...
Ye-Eun Son +6 more
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Frontiers in Environmental Science, 2022 The emergence of antibiotic resistance genes (ARGs) is a great risk to the ecosystem and human health; however, there are rare systematic studies about the characterization and source identification of ARGs in continental rivers.
Xiaobo Yang +12 more
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Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization. [PDF]
PLoS ONE, 2014 The metagenomic method directly sequences and analyses genome information from microbial communities. The main computational tasks for metagenomic analyses include taxonomical and functional structure analysis for all genomes in a microbial community ...
Xiaoquan Su +4 more
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Frontiers in Immunology, 2021 Background & AimsPeriodontitis increases the risk of nonalcoholic fatty liver disease (NAFLD); however, the underlying mechanisms are unclear.
Kyoko Yamazaki +26 more
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Metagenomic Analysis of Silage [PDF]
Journal of Visualized Experiments, 2017 Metagenomics is defined as the direct analysis of deoxyribonucleic acid (DNA) purified from environmental samples and enables taxonomic identification of the microbial communities present within them. Two main metagenomic approaches exist; sequencing the 16S rRNA gene coding region, which exhibits sufficient variation between taxa for identification ...
Tennant, RK +4 more
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Integrative workflows for metagenomic analysis [PDF]
Frontiers in Cell and Developmental Biology, 2014 The rapid evolution of all sequencing technologies, described by the term Next Generation Sequencing (NGS), have revolutionized metagenomic analysis. They constitute a combination of high-throughput analytical protocols, coupled to delicate measuring techniques, in order to potentially discover, properly assemble and map allelic sequences to the ...
Efthymios Ladoukakis +2 more
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Metagenomic Approaches to Analyze Antimicrobial Resistance: An Overview
Frontiers in Genetics, 2021 Antimicrobial resistance is a major global public health problem, which develops when pathogens acquire antimicrobial resistance genes (ARGs), primarily through genetic recombination between commensal and pathogenic microbes.
Vinicius A. C. de Abreu +2 more
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Multivariate analysis of functional metagenomes [PDF]
Frontiers in Genetics, 2013 Metagenomics is a primary tool for the description of microbial and viral communities. The sheer magnitude of the data generated in each metagenome makes identifying key differences in the function and taxonomy between communities difficult to elucidate.
Elizabeth A. Dinsdale +16 more
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Frontiers in Bioengineering and Biotechnology, 2022 Carbon capture and utilization has been proposed as one strategy to combat global warming. Microbial electrolysis cells (MECs) combine the biological conversion of carbon dioxide (CO2) with the formation of valuable products such as methane.
Sabine Spiess +8 more
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