Results 101 to 110 of about 7,727 (208)

“Candidatus Thermonerobacter thiotrophicus,” A Non-phototrophic Member of the Bacteroidetes/Chlorobi With Dissimilatory Sulfur Metabolism in Hot Spring Mat Communities

Frontiers in Microbiology, 2019
In this study we present evidence for a novel, thermophilic bacterium with dissimilatory sulfur metabolism, tentatively named “Candidatus Thermonerobacter thiotrophicus,” which is affiliated with the Bacteroides/Ignavibacteria/Chlorobi and which we ...
Vera Thiel, Vera Thiel, Amaya M. Garcia Costas, Amaya M. Garcia Costas, Nathaniel W. Fortney, Joval N. Martinez, Joval N. Martinez, Marcus Tank, Marcus Tank, Eric E. Roden, Eric S. Boyd, David M. Ward, Satoshi Hanada, Donald A. Bryant, Donald A. Bryant   +14 more
doaj   +1 more source

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant [PDF]

, 2008
Bremges A, Maus I, Belmann P, et al. Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant. GigaScience.
P Weiland, S Jaenicke, R Wirth, M Zakrzewski, Y Stolze, A Schlüter, U Gubler, AM Bolger, S Boisvert, B Langmead, H Li, D Hyatt, M Kanehisa, C Camacho, AR Quinlan   +14 more
core   +3 more sources

Omics Analysis of Lignin Degradation by the Gut Microbiomes of Wood‐Eating Hypomeces squamosus Fabricius

MicrobiologyOpen, Volume 14, Issue 6, December 2025.
(1) The dominant lignin‐degrading genus taxon was Pantoea. (2) The key genes MHS‐HN_11398_2 (protocatechuate 2,3‐dioxygenase) and MHS‐HN_4821_1 (muconolactone d‐isomerase) were identified. (3) Three degrading pathways, ortho‐cleavage and meta‐cleavage of catechol, and ring‐opening of protocatechuate, were found. ABSTRACT Microbial degradation of lignin
Chunlan Mao, Qing Zhang, Jing Zhang, Xiangkai Li   +3 more
wiley   +1 more source

MetaTrans: an open-source pipeline for metatranscriptomics [PDF]

Scientific Reports, 2016
AbstractTo date, meta-omic approaches use high-throughput sequencing technologies, which produce a huge amount of data, thus challenging modern computers. Here we present MetaTrans, an efficient open-source pipeline to analyze the structure and functions of active microbial communities using the power of multi-threading computers.
Martinez, Xavier, Pozuelo, Marta, Pascal, Victoria, Campos, David, Gut, Ivo Glynne, Gut, Marta, Azpiroz, Fernando, Guarner, Francisco, Manichanh, Chaysavanh   +8 more
openaire   +3 more sources

Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds

MicrobiologyOpen, 2020
Microbes active in extreme cold are not as well explored as those of other extreme environments. Studies have revealed a substantial microbial diversity and identified cold‐specific microbiome molecular functions.
Chengsheng Zhu, Maximilian Miller, Nicholas Lusskin, Benoît Bergk Pinto, Lorrie Maccario, Max Häggblom, Timothy Vogel, Catherine Larose, Yana Bromberg   +8 more
doaj   +1 more source

2017 State-of the Science of Dispersants and Dispersed Oil (DDO) in U.S. Arctic Waters: Degradation and Fate [PDF]

, 2017
Chemical dispersants were employed on an unprecedented scale during the Deepwater Horizon oil spill in the Gulf of Mexico, and could be a response option should a large spill occur in Arctic waters. The use of dispersants in response to that spill raised
Coastal Response Research Center (CRRC)
core   +1 more source

Novel Methanotrophs of the Family Methylococcaceae from Different Geographical Regions and Habitats [PDF]

, 2015
Terrestrial methane seeps and rice paddy fields are important ecosystems in the methane cycle. Methanotrophic bacteria in these ecosystems play a key role in reducing methane emission into the atmosphere.
Birkeland, Nils-Kåre, Bodrossy, Levente, Islam, Tajul, Larsen, Øivind, Murrell, J., Panosyan, Hovik, Torsvik, Vigdis, Øvreås, Lise   +7 more
core   +2 more sources

Modelling of the Systemic Inflammatory Host Response in Relation to the Microbiome of the Endodontic Infection

International Endodontic Journal, Volume 58, Issue 12, Page 1926-1939, December 2025.
ABSTRACT Aim This study aimed to investigate systemic inflammatory responses in individuals with apical periodontitis (AP) compared to age‐matched healthy controls, using advanced multiway modelling techniques. We examined associations between inflammatory mediators, age, gender, symptomatic status, and the microbial composition and function to better ...
A. C. Georgiou, G. R. van der Ploeg, J. A. Westerhuis, S. V. van der Waal, A. Heintz‐Buschart, A. K. Smilde, B. W. Brandt   +6 more
wiley   +1 more source

Evidence for a Role of Extraintestinal Pathogenic Escherichia coli, Enterococcus faecalis and Streptococcus gallolyticus in the Aetiology of Exudative Cloacitis in the Critically Endangered Kākāpō (Strigops habroptilus)

Molecular Ecology, Volume 34, Issue 24, December 2025.
ABSTRACT The kākāpō is a critically endangered flightless parrot which suffers from exudative cloacitis, a debilitating disease resulting in inflammation of the vent margin or cloaca. Despite this disease emerging over 20 years ago, the cause of exudative cloacitis remains elusive.
Rebecca K. French, Stephanie J. Waller, Janelle R. Wierenga, Rebecca M. Grimwood, James Hodgkinson‐Bean, Andrew Digby, Lydia Uddstrom, Daryl Eason, Kākāpō Recovery Team, Lisa S. Argilla, Patrick J. Biggs, Adrian Cookson, Nigel P. French, Jemma L. Geoghegan   +13 more
wiley   +1 more source

Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information

mBio, 2019
Pulmonary exacerbations are the leading cause of death in cystic fibrosis (CF) patients. To track microbial dynamics during acute exacerbations, a CF rapid response (CFRR) strategy was developed.
Ana Georgina Cobián Güemes, Yan Wei Lim, Robert A. Quinn, Douglas J. Conrad, Sean Benler, Heather Maughan, Rob Edwards, Thomas Brettin, Vito Adrian Cantú, Daniel Cuevas, Rohaum Hamidi, Pieter Dorrestein, Forest Rohwer   +12 more
doaj   +1 more source