Results 81 to 90 of about 7,727 (208)

Fungal and prokaryotic activities in the marine subsurface biosphere at Peru Margin and Canterbury Basin inferred from RNA-based analyses and microscopy [PDF]

, 2016
© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 7 (2016): 846, doi:10.3389/fmicb.2016.00846.The deep sedimentary biosphere ...
Beaudoin, David J., Burgaud, Gaëtan, Edgcomb, Virginia P., Pachiadaki, Maria G., Redou, Vanessa   +4 more
core   +1 more source

Metatranscriptomic census of active protists in soils [PDF]

The ISME Journal, 2015
Abstract The high numbers and diversity of protists in soil systems have long been presumed, but their true diversity and community composition have remained largely concealed. Traditional cultivation-based methods miss a majority of taxa, whereas molecular barcoding approaches employing PCR introduce significant biases in reported ...
Geisen, S., Tveit, A. T., Clark, I. M., Richter, A., Svenning, M. M., Bonkowski, M., Urich, T.   +6 more
openaire   +4 more sources

Exploring the Metatranscriptome of Bacterial Communities of Two Moss Species Thriving in Different Environments—Terrestrial and Aquatic

Plants
Mosses host diverse bacterial communities essential for their fitness, nutrient acquisition, stress tolerance, and pathogen defense. Understanding the microbiome’s taxonomic composition is the first step, but unraveling their functional capabilities is ...
Vesselin Baev, Gana Gecheva, Elena Apostolova, Mariyana Gozmanova, Galina Yahubyan   +4 more
doaj   +1 more source

De novo metatranscriptome assembly and coral gene expression profile of Montipora capitata with growth anomaly

BMC Genomics, 2017
Background Scleractinian corals are a vital component of coral reef ecosystems, and of significant cultural and economic value worldwide. As anthropogenic and natural stressors are contributing to a global decline of coral reefs, understanding coral ...
Monika Frazier, Martin Helmkampf, M. Renee Bellinger, Scott M. Geib, Misaki Takabayashi   +4 more
doaj   +1 more source

Evolutionary genomics of a cold-adapted diatom: Fragilariopsis cylindrus [PDF]

, 2017
The Southern Ocean houses a diverse and productive community of organisms1, 2. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal ...
A Brady, A De Martino, A Marchetti, A Tagliabue, A Toseland, AA Salamov, AD Rogers, AE Darling, AG Murzin, AJ Alverson, AJ Drummond, AJ Drummond, AL Price, Alaguraj Veluchamy, Alexandra Z. Worden, Andrew E. Allen, Andrew Toseland, Angela Falciatore, Ansgar Gruber, Antonio E. Fortunato, Asaf Salamov, B Peng, Barbara R. Lyon, Ben J. Ward, Beverley R. Green, BJ Ward, C Bowler, C-S Chin, CH von Quillfeld, Chris Bowler, Christiane Uhlig, Christoph Mayer, Christopher L. Dupont, CL Dupont, CL Dupont, CL Parkinson, Cock van Oosterhout, DB Jaffe, DH Huson, DJ McCarthy, DL Wheeler, DN Thomas, E Birney, E Quevillon, E. Virginia Armbrust, EM Bertrand, Erika A. Lindquist, EV Armbrust, EV Koonin, F Supek, Florian Leese, Florian Maumus, G Parra, G Peers, Gernot Glöckner, GU Yule, H Li, H Nielsen, Hadi Quesneville, Igor V. Grigoriev, J Gough, J Gough, J Jurka, J Wilhelm, JA Goldman, JA Raymond, James A. Raymond, Jan Strauss, JC Knight, JE Stajich, Jeremy Schmutz, JJ Doyle, Joel Martin, K Melén, K Tamura, Kerrie W. Barry, Klaus U. Valentin, M Bashton, M Fiala, M Guo, M Hasegawa, M Kanehisa, M Pendleton, M Vancoppenolle, MA Larkin, Maria I. Ferrante, Mark McMullan, Matthew D. Clark, MD Robinson, MD Young, Micaela Parker, Michael G. Janech, MK Kuhner, NM Price, P Chomczynski, P Librado, Peter G. Kroth, Pirita Paajanen, PL Croot, PW Rose, R Gamsjaeger, Rachel Hipkin, Remo Sanges, RF Strzepek, Robert P. Otillar, Ruben E. Valas, S Anders, S Wang, S-H Kang, Stephan Frickenhaus, T Blunier, Taoyang Wu, TC Bruen, TD Wu, Thomas Mock, TM Lowe, V Smetacek, Vincent Moulton, WJ Kent, Y Benjamini, Z Yang   +120 more
core   +3 more sources

Microbial Metabolism and Disease Virulence Changes Across Day and Night in Coral Black Band Disease Lesions

Environmental Microbiology, Volume 28, Issue 2, February 2026.
Metatranscriptomic reads from black band disease (BBD) lesions derived from samples collected during the day and night were mapped to near‐complete BBD‐derived metagenome‐assembled genomes to profile diurnal metabolic shifts among key microbial groups. Photosynthesis genes from the cyanobacterium Roseofilum reptotaenium were highly expressed during the
Julia Y. Hung, Ira Cooke, Yui Sato, David J. Miller, David G. Bourne   +4 more
wiley   +1 more source

The Viral Fraction Metatranscriptomes of Lake Baikal

Microorganisms, 2022
This article characterises viral fraction metatranscriptomes (smaller than 0.2 µm) from the pelagic zone of oligotrophic Lake Baikal (Russia). The study revealed the dominance of transcripts of DNA viruses: bacteriophages and algal viruses. We identified transcripts similar to Pithovirus sibericum, a nucleocytoplasmic large DNA virus (NCLDV) isolated ...
Sergey Potapov, Andrey Krasnopeev, Irina Tikhonova, Galina Podlesnaya, Anna Gorshkova, Olga Belykh   +5 more
openaire   +3 more sources

Heat Shock Response of the Active Microbiome From Perennial Cave Ice

Frontiers in Microbiology, 2022
Ice caves constitute the newly investigated frozen and secluded model habitats for evaluating the resilience of ice-entrapped microbiomes in response to climate changes.
Antonio Mondini, Muhammad Zohaib Anwar, Muhammad Zohaib Anwar, Lea Ellegaard-Jensen, Paris Lavin, Paris Lavin, Carsten Suhr Jacobsen, Cristina Purcarea   +7 more
doaj   +1 more source

Diversity, Function and Activity of DNA Viruses in the Qiangyong Proglacial Lake Sediment, the Tibetan Plateau

Environmental Microbiology Reports, Volume 18, Issue 1, February 2026.
This study identified DNA viruses from Qiangyong proglacial lake sediments on the Tibetan Plateau, revealing a highly diverse and previously uncharacterized viral community. These viruses influence microbial community structure and function by infecting key nutrient‐transforming taxa and encoding auxiliary metabolic genes that modulate host metabolism.
Yang Zhao, Meiling Feng, Hongfei Chi, Keshao Liu, Rong Wen, Weizhen Zhang, Pengfei Liu   +6 more
wiley   +1 more source

Metatranscriptomic analysis of extremely halophilic viral communities [PDF]

The ISME Journal, 2011
Abstract Hypersaline environments harbour the highest number of viruses reported for aquatic environments. In crystallizer ponds from solar salterns, haloviruses coexist with extremely halophilic Archaea and Bacteria and present a high diversity although little is known about their activity. In this work, we analyzed the viral expression
Santos, Fernando, Moreno-Paz, Mercedes, Meseguer, Inmaculada, López, Cristina, Rosselló-Mora, Ramón, Parro-García, Víctor, Antón, Josefa   +6 more
openaire   +3 more sources