Results 31 to 40 of about 18,529 (279)

Gene finding in metatranscriptomic sequences [PDF]

BMC Bioinformatics, 2014
Metatranscriptomic sequencing is a highly sensitive bioassay of functional activity in a microbial community, providing complementary information to the metagenomic sequencing of the community. The acquisition of the metatranscriptomic sequences will enable us to refine the annotations of the metagenomes, and to study the gene activities and their ...
Ismail, Wazim, Ye, Yuzhen, Tang, Haixu
openaire   +2 more sources

SAMSA2: a standalone metatranscriptome analysis pipeline [PDF]

BMC Bioinformatics, 2017
AbstractBackgroundComplex microbial communities are an area of rapid growth in biology. Metatranscriptomics allows one to investigate the gene activity in an environmental sample via high-throughput sequencing. Metatranscriptomic experiments are computationally intensive because the experiments generate a large volume of sequence data and the sequences
Westreich, Samuel T, Treiber, Michelle L, Mills, David A, Korf, Ian, Lemay, Danielle G   +4 more
openaire   +5 more sources

Decoding Microbial Responses to Ammonia Shock Loads in Biogas Reactors through Metagenomics and Metatranscriptomics

Environmental Science and Technology, 2023
The presence of elevated ammonia levels is widely recognized as a significant contributor to process inhibition in biogas production, posing a common challenge for biogas plant operators.
M. Gaspari, G. Ghiotto, V. Centurion, Thomas A. Kotsopoulos, D. Santinello, S. Campanaro, L. Treu, P. Kougias   +7 more
semanticscholar   +1 more source

Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation [PDF]

, 2014
Background Metatranscriptome sequence data can contain highly redundant sequences from diverse populations of microbes and so data reduction techniques are often applied before taxonomic and functional annotation.
Mock, Thomas, Moulton, Vincent, Moxon, Simon, Toseland, Andrew   +3 more
core   +1 more source

Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality

Disease Models & Mechanisms, 2022
To elucidate the molecular mechanisms that manifest lung abnormalities during severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections, we performed whole-transcriptome sequencing of lung autopsies from 31 patients with severe COVID-19 and
Anshul Budhraja, Anubhav Basu, Atish Gheware, Dasari Abhilash, Seesandra Rajagopala, Suman Pakala, Madhuresh Sumit, Animesh Ray, Arulselvi Subramaniam, Purva Mathur, Aruna Nambirajan, Sachin Kumar, Ritu Gupta, Naveet Wig, Anjan Trikha, Randeep Guleria, Chitra Sarkar, Ishaan Gupta, Deepali Jain   +18 more
doaj   +1 more source

Metatranscriptomics reveals diversity of symbiotic interaction and mechanisms of carbon exchange in the marine cyanolichen Lichina pygmaea.

New Phytologist, 2023
Lichens are exemplar symbioses based upon carbon exchange between photobionts and their mycobiont hosts. Historically considered a two-way relationship, some lichen symbioses have been shown to contain multiple photobiont partners; however, the way in ...
Nathan A. M. Chrismas, Beth Tindall-Jones, Helen L. Jenkins, Joanna Harley, Kimberley E. Bird, Michael Cunliffe   +5 more
semanticscholar   +1 more source

Gut Microbial Metabolism and Nonalcoholic Fatty Liver Disease. [PDF]

, 2019
The gut microbiome, the multispecies community of microbes that exists in the gastrointestinal tract, encodes several orders of magnitude more functional genes than the human genome. It also plays a pivotal role in human health, in part due to metabolism
Lynch, Susan V, Sharpton, Suzanne R, Terrault, Norah A, Yong, Germaine JM   +3 more
core   +1 more source

Genomic and Transcriptomic Evidence Supports Methane Metabolism in Archaeoglobi

mSystems, 2020
Euryarchaeal lineages have been believed to have a methanogenic last common ancestor. However, members of euryarchaeal Archaeoglobi have long been considered nonmethanogenic and their evolutionary history remains elusive.
Yi-Fan Liu, Jing Chen, Livia S. Zaramela, Li-Ying Wang, Serge Maurice Mbadinga, Zhao-Wei Hou, Xiao-Lin Wu, Ji-Dong Gu, Karsten Zengler, Bo-Zhong Mu   +9 more
doaj   +1 more source

Augmenting Biogas Process Modeling by Resolving Intracellular Metabolic Activity [PDF]

, 2019
The process of anaerobic digestion in which waste biomass is transformed to methane by complex microbial communities has been modeled for more than 16 years by parametric gray box approaches that simplify process biology and do not resolve intracellular ...
Denny Popp, Dirk Benndorf, Dirk Benndorf, Fabian Bonk, Florian Centler, Sabine Koch, Steffen Klamt, Sören Weinrich   +7 more
core   +1 more source

Metatranscriptomic analyses of honey bee colonies [PDF]

Frontiers in Genetics, 2015
Honey bees face numerous biotic threats from viruses to bacteria, fungi, protists, and mites. Here we describe a thorough analysis of microbes harbored by worker honey bees collected from field colonies in geographically distinct regions of Turkey. Turkey is one of the World's most important centers of apiculture, harboring five subspecies of Apis ...
Tozkar, Cansu Özge, EVANS, Jay D., Kence, Meral, Kence, Aykut, HUANG, Qiang   +4 more
openaire   +4 more sources