Profiling of the Microbiome Associated With Nitrogen Removal During Vermifiltration of Wastewater From a Commercial Dairy. [PDF]
, 2018 Vermifiltration is a biological treatment process during which earthworms (e.g., Eisenia fetida) and microorganisms reduce the organic load of wastewater.
Hess, Matthias +2 more
core +3 more sources
DNA/RNA Preservation in Glacial Snow and Ice Samples
Frontiers in Microbiology, 2022 The preservation of nucleic acids for high-throughput sequencing is an ongoing challenge for field scientists. In particular, samples that are low biomass, or that have to be collected and preserved in logistically challenging environments (such as ...
Christopher B. Trivedi +10 more
doaj +1 more source
Comparison of Niskin vs. in situ approaches for analysis of gene expression in deep Mediterranean Sea water samples [PDF]
, 2014 Author Posting. © The Author(s), 2014. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part II: Topical Studies in
Edgcomb, Virginia P. +5 more
core +1 more source
Transcriptional Shifts Highlight the Role of Nutrients in Harmful Brown Tide Dynamics
Frontiers in Microbiology, 2019 Harmful algal blooms (HABs) threaten ecosystems and human health worldwide. Controlling nitrogen inputs to coastal waters is a common HAB management strategy, as nutrient concentrations often suggest coastal blooms are nitrogen-limited. However, defining
Louie L. Wurch +5 more
doaj +1 more source
Structured RNA Contaminants in Bacterial Ribo-Seq
mSphere, 2020 Ribosome profiling (Ribo-Seq) is a powerful method to study translation in bacteria. However, Ribo-Seq signal can be observed across RNAs that one would not expect to be bound by ribosomes.
Brayon J. Fremin, Ami S. Bhatt
doaj +1 more source
Niche differentiation is spatially and temporally regulated in the rhizosphere. [PDF]
, 2020 The rhizosphere is a hotspot for microbial carbon transformations, and is the entry point for root polysaccharides and polymeric carbohydrates that are important precursors to soil organic matter (SOM).
Banfield, Jillian F +10 more
core +1 more source
Streams of data from drops of water: 21st century molecular microbial ecology [PDF]
, 2018 Microorganisms are ubiquitous and represent a taxonomically and functionally diverse component of freshwater environments of significant ecological importance.
Clark, DR +8 more
core +2 more sources
Back to the future of soil metagenomics [PDF]
, 2016 JN was funded by a fellowship from the French MENESR.Peer reviewedPeer ...
Alexander eSczyrba +49 more
core +11 more sources
Bacterial metatranscriptome of dentin caries [PDF]
Journal of Oral Microbiology, 2017 Dental caries results from altered microbial community activity in disease compared to health. Caries advanced into dentin was compared with coronal caries and caries-free sites. Oral bacterial samples were obtained from young children, placed in RNAlater and stored frozen. mRNA was purified and sequenced on an Illumina NextSeq 500 platform.
Anne CR Tanner +7 more
openaire +2 more sources
Spatial metatranscriptomics resolves host–bacteria–fungi interactomes
Nature Biotechnology, 2023 AbstractThe interactions of microorganisms among themselves and with their multicellular host take place at the microscale, forming complex networks and spatial patterns. Existing technology does not allow the simultaneous investigation of spatial interactions between a host and the multitude of its colonizing microorganisms, which limits our ...
Sami Saarenpää +6 more
openaire +2 more sources