Results 121 to 130 of about 634,170 (178)

Investigating the origin of Automatic Rhodopsin Modeling outliers using the microbial Gloeobacter rhodopsin as testbed

The Journal of Physical Chemistry B
The Automatic Rhodopsin Modeling (ARM) approach is a computational workflow devised for the automatic build up of hybrid quantum mechanics/molecular mechanics (QM/MM) models of wild-type rhodopsins and mutants, with the purpose of establish- ing trends in their photophysical and photochemical properties.
Barreiro-Lage, Darío, Ledentu, Vincent, D’ascenzi, Jacopo, Huix-Rotllant, Miquel, Ferré, Nicolas   +4 more
openaire   +3 more sources

Mimicking Microbial Rhodopsin Isomerization [PDF]

Biophysical Journal, 2018
Alireza Ghanbarpour, Muath Nairat, Meisam Nosrati, Elizabeth Santos, Chrysoula Vasileiou, Babak Borhan, James Geiger   +6 more
openaire   +1 more source

Diversity and Potential of Microbial Rhodopsins

Seibutsu Butsuri, 2020
SUDO, Yuki, KOJIMA, Keiichi
openaire   +2 more sources

Unique Vibrational Characteristics and Structures of the Photoexcited Retinal Chromophore in Ion-Pumping Rhodopsins

Photoisomerization of an all-trans-retinal chromophore triggers ion transport in microbial ion-pumping rhodopsins. Understanding chromophore structures in the electronically excited (S1) state provides insights into the structural evolution on the ...
Hideki Kandori (534378), Yasuhisa Mizutani (1335711), Tomo Ejiri (17358866), Shigehiko Hayashi (761677), Misao Mizuno (1335720), Zixuan Li (164510)   +5 more
core   +1 more source

Correction: Structural and spectroscopic basis of excitation energy transfer in microbial rhodopsins binding xanthophylls. [PDF]

Chem Sci
Salvadori G, Saraceno P, Santomieri A, John C, Pedraza-González L.   +4 more
europepmc   +1 more source

Ultrafast Protein Dynamics Prior to Retinal Photoisomerization in Microbial Rhodopsins. [PDF]

J Phys Chem Lett
Tahara S, Kurihara R, Kojima K, Kuramochi H, Takeuchi S, Sudo Y, Tahara T.   +6 more
europepmc   +1 more source

Applicability of Styrene-Maleic Acid Copolymer for Two Microbial Rhodopsins, RxR and HsSRI. [PDF]

Biophys J, 2020
Ueta T, Kojima K, Hino T, Shibata M, Nagano S, Sudo Y.   +5 more
europepmc   +1 more source

Structural and spectroscopic basis of excitation energy transfer in microbial rhodopsins binding xanthophylls. [PDF]

Chem Sci
Salvadori G, Saraceno P, Santomieri A, John C, Pedraza-González L.   +4 more
europepmc   +1 more source

Theoretical principles for designing fluorescent rhodopsins: Electrostatic control of excited-state pathways

Microbial rhodopsins are widely used in optogenetics as light-driven actuators and genetically encoded voltage indicators. However, most rhodopsins exhibit extremely weak fluorescence due to rapid nonradiative relaxation of the retinal chromophore on the
Olivucci, Massimo, Walisinghe, Danushka, Sacchetta, Filippo   +2 more
core   +1 more source

An affordable convertible: Engineering proton transfer pathways in microbial rhodopsins. [PDF]

Biophys J
Brown LS.
europepmc   +1 more source