Results 11 to 20 of about 120,736 (335)
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data [PDF]
Bioinformatics, 2014 MOTIVATION Open-source bacterial genome assembly remains inaccessible to many biologists because of its complexity. Few software solutions exist that are capable of automating all steps in the process of de novo genome assembly from Illumina data ...
D. Coil, G. Jospin, A. Darling
semanticscholar +5 more sources
CD-HIT-OTU-MiSeq, an Improved Approach for Clustering and Analyzing Paired End MiSeq 16S rRNA Sequences [PDF]
, 2017 In recent years, Illumina MiSeq sequencers replaced pyrosequencing platforms and became dominant in 16S rRNA sequencing. One unique feature of MiSeq technology, compared with Pyrosequencing, is the Paired End (PE) reads, with each read can be sequenced ...
Weizhong Li, Yuanyuan Chang
core +2 more sources
Archives of Forensic Medicine and Criminology, 2023 Introduction: Massively parallel sequencing of mitogenomes usually requires prior amplification.
Katarzyna Skonieczna +3 more
doaj +2 more sources
Comparison of MiSeq, MinION, and hybrid genome sequencing for analysis of Campylobacter jejuni [PDF]
Scientific Reports, 2021 The sequencing, assembly, and analysis of bacterial genomes is central to tracking and characterizing foodborne pathogens. The bulk of bacterial genome sequencing at the US Food and Drug Administration is performed using short-read Illumina MiSeq ...
Jason M. Neal-McKinney +4 more
semanticscholar +4 more sources
Hybrid De Novo Genome Assembly Using MiSeq and SOLiD Short Read Data. [PDF]
PLoS ONE, 2015 A hybrid de novo assembly pipeline was constructed to utilize both MiSeq and SOLiD short read data in combination in the assembly. The short read data were converted to a standard format of the pipeline, and were supplied to the pipeline components such ...
Tsutomu Ikegami +6 more
doaj +2 more sources
Illumina MiSeq sequencing analysis of fungal diversity in stored dates [PDF]
BMC Microbiology, 2017 Background Date palm has been a major fruit tree in the Middle East over thousands of years, especially in the Arabian Peninsula. Dates are consumed fresh (Rutab) or after partial drying and storage (Tamar) during off-season.
Ismail M. Al-Bulushi +4 more
doaj +3 more sources
Primer ID MiSeq Library Prep v2
, 2017 This is the protocol to prepare Primer ID MiSeq sequencing library. Viral RNA was first extracted using QIAamp viral RNA extraction kit. The block of random nucleotides (Ns) in the cDNA primers served as the Primer ID.
Shuntai Zhou
core +2 more sources
Primer ID MiSeq Library Prep v1
, 2017 This is the protocol to prepare Primer ID MiSeq sequencing library. Viral RNA was first extracted using QIAamp viral RNA extraction kit. The block of random nucleotides (Ns) in the cDNA primers served as the Primer ID.
Shuntai Zhou
core +2 more sources
Fungal Community Structure of Macroalga Ulva Intestinalis Revealed by Miseq Sequencing [PDF]
Squalen, 2017 Since algae are well known as the host of fungi, the information about total fungal community associated with alga is needed to give the initial data that is useful for natural product discovery. The study on total fungal community associated with marine
Agusman Agusman, Feng Danqing
doaj +3 more sources
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform [PDF]
Nucleic Acids Research, 2015 With read lengths of currently up to 2 × 300 bp, high throughput and low sequencing costs Illumina's MiSeq is becoming one of the most utilized sequencing platforms worldwide. The platform is manageable and affordable even for smaller labs.
M. Schirmer +5 more
semanticscholar +5 more sources