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Internal Models in Biological Control [PDF]

Annual Review of Control, Robotics, and Autonomous Systems, 2019
Rationality principles such as optimal feedback control and Bayesian inference underpin a probabilistic framework that has accounted for a range of empirical phenomena in biological sensorimotor control.
Daniel C. McNamee, D. Wolpert
semanticscholar   +5 more sources

Realistic Models of Biological Motion [PDF]

Physica A: Statistical Mechanics and its Applications, 1998
The origin of biological motion can be traced back to the function of molecular motor proteins. Cytoplasmic dynein and kinesin transport organelles within our cells moving along a polymeric filament, the microtubule.
Ajdari, Ajdari, Ajdari, Astumian, Astumian, Cooke, Cooke, Doering, Edman, Eisenberg, Faucheux, Faucheux, Finer, Gilbert, Goldman, Harada, Hill, Hirose, Hoenger, Hunt, Huxley, Huxley, Imre Derényi, Katz, Kikkawa, Kron, Kull, Leibler, Lymn, Magnasco, Millonas, Millonas, Pate, Pate, Rayment, Rousselet, Sablin, Sleep, Svoboda, Svoboda, Svoboda, Tamás Vicsek, Vale   +42 more
core   +3 more sources

Setting Parameters for Biological Models With ANIMO [PDF]

Electronic Proceedings in Theoretical Computer Science, 2014
ANIMO (Analysis of Networks with Interactive MOdeling) is a software for modeling biological networks, such as e.g. signaling, metabolic or gene networks. An ANIMO model is essentially the sum of a network topology and a number of interaction parameters.
Stefano Schivo, Jetse Scholma, Marcel Karperien, Janine N. Post, Jaco van de Pol, Rom Langerak   +5 more
doaj   +6 more sources

On validation and invalidation of biological models [PDF]

BMC Bioinformatics, 2009
Background Very frequently the same biological system is described by several, sometimes competing mathematical models. This usually creates confusion around their validity, ie, which one is correct. However, this is unnecessary since validity of a model
Anderson James, Papachristodoulou Antonis   +1 more
doaj   +4 more sources

Topological data analysis of biological aggregation models. [PDF]

PLoS ONE, 2015
We apply tools from topological data analysis to two mathematical models inspired by biological aggregations such as bird flocks, fish schools, and insect swarms.
Chad M Topaz, Lori Ziegelmeier, Tom Halverson   +2 more
doaj   +3 more sources

DNA-DAPI Interaction-Based Method for Cell Proliferation Rate Evaluation in 3D Structures

Current Issues in Molecular Biology, 2021
Effective cell number monitoring throughout the three-dimensional (3D) scaffold is a key factor in tissue engineering. There are many methods developed to evaluate cell number in 2D environments; however, they often encounter limitations in 3D. Therefore,
Egidijus Šimoliūnas, Paulius Kantakevičius, Miglė Kalvaitytė, Lina Bagdzevičiūtė, Milda Alksnė, Daiva Baltriukienė   +5 more
doaj   +1 more source

Microglia isolation from aging mice for cell culture: A beginner’s guide

Frontiers in Cellular Neuroscience, 2023
Microglia, the innate immune cell of the central nervous system, play significant roles in brain development, maintenance, homeostasis, and neuroinflammation.
Akshay Kumar Vijaya, Monika Iešmantaitė, Virginia Mela, Daiva Baltriukienė, Aurelijus Burokas   +4 more
doaj   +1 more source

Hypergraph models of biological networks to identify genes critical to pathogenic viral response [PDF]

BMC Bioinformatics, 2020
Background Representing biological networks as graphs is a powerful approach to reveal underlying patterns, signatures, and critical components from high-throughput biomolecular data.
Song Feng, Emily Heath, Brett Jefferson, C. Joslyn, Henry Kvinge, H. Mitchell, Brenda Praggastis, A. Eisfeld, A. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters, P. Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, T. Sheahan, A. Cockrell, Jacob F. Kocher, K. Stratton, Natalie C. Heller, L. Bramer, M. Diamond, R. Baric, K. Waters, Y. Kawaoka, J. Mcdermott, Emilie Purvine   +27 more
semanticscholar   +1 more source

Genetic Ablation of Ankrd1 Mitigates Cardiac Damage during Experimental Autoimmune Myocarditis in Mice

Biomolecules, 2022
Myocarditis (MC) is an inflammatory disease of the myocardium that can cause sudden death in the acute phase, and dilated cardiomyopathy (DCM) with chronic heart failure as its major long-term outcome.
Ieva Rinkūnaitė, Egidijus Šimoliūnas, Milda Alksnė, Gabrielė Bartkutė, Siegfried Labeit, Virginija Bukelskienė, Julius Bogomolovas   +6 more
doaj   +1 more source

Lagrangians for Biological Models [PDF]

Journal of Nonlinear Mathematical Physics, 2012
We show that a method presented in [S.L. Trubatch and A. Franco, Canonical Procedures for Population Dynamics, J. Theor. Biol. 48 (1974), 299-324] and later in [G.H. Paine, The development of Lagrangians for biological models, Bull. Math. Biol. 44 (1982) 749-760] for finding Lagrangians of classic models in biology, is actually based on finding the ...
M.C. Nucci, K.M. Tamizhmani
openaire   +6 more sources