BEAST: Bayesian evolutionary analysis by sampling trees [PDF]
BMC Evolutionary Biology, 2007 Background The evolutionary analysis of molecular sequence variation is a statistical enterprise. This is reflected in the increased use of probabilistic models for phylogenetic inference, multiple sequence alignment, and molecular population genetics ...
Drummond Alexei J, Rambaut Andrew
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Impact of molecular sequence data completeness on HIV cluster detection and a network science approach to enhance detection. [PDF]
Sci Rep, 2022 Mazrouee S +8 more
europepmc +3 more sources
Molecular Phylogenetics of Poaceae: An Expanded Analysis ofrbcL Sequence Data
Molecular Phylogenetics and Evolution, 1996 Phylogenetic analyses of rbcL sequence data from grasses are presented, extending the work of an earlier study. Based on molecular evidence that Joinvilleaceae and Restionaceae are closely allied to Poaceae, species from these families and from a distantly related dicot were variously employed as outgroups and analyzed with 23 species of Poaceae using ...
M R, Duvall, B R, Morton
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Molecular phylogeny of Asian Meconopsis based on nuclear ribosomal and chloroplast DNA sequence data. [PDF]
PLoS ONE, 2014 The taxonomy and phylogeny of Asian Meconopsis (Himalayan blue poppy) remain largely unresolved. We used the internal transcribed spacer (ITS) region of nuclear ribosomal DNA (nrDNA) and the chloroplast DNA (cpDNA) trnL-F region for phylogenetic ...
Yu-Cheng Liu +3 more
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Extracting Dwell Time Sequences from Processive Molecular Motor Data [PDF]
Biophysical Journal, 2006 Processive molecular motors, such as kinesin, myosin, or dynein, convert chemical energy into mechanical energy by hydrolyzing ATP. The mechanical energy is used for moving in discrete steps along the cytoskeleton and carrying a molecular load. Single-molecule recordings of motor position along a substrate polymer appear as a stochastic staircase ...
Lorin S. Milescu +3 more
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Five nuclear protein-coding markers for establishing a robust phylogenetic framework of niphargid crustaceans (Niphargidae: Amphipoda) and new molecular sequence data. [PDF]
Data Brief, 2019 Moškrič A, Verovnik R.
europepmc +2 more sources
Performability of Deep Recurrent Neural Networks for Molecular Sequence data [PDF]
International Journal of Computing and Digital Systems, 2023 Roshan R. Kotkondawar +3 more
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Biomolecules, 2021 Objective: To identify and validate circulating micro RNAs (miRNAs) that mark gene expression changes in articular cartilage early in osteoarthritis (OA) pathophysiology process.
Yolande F. M. Ramos +7 more
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Root of the Eukaryota Tree as Inferred from Combined Maximum Likelihood Analyses of Multiple Molecular Sequence Data [PDF]
Molecular biology and evolution, 2004 Nobuko Arisue +2 more
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Rise and Fall of SARS-CoV-2 Lineage A.27 in Germany
Viruses, 2021 Here, we report on the increasing frequency of the SARS-CoV-2 lineage A.27 in Germany during the first months of 2021. Genomic surveillance identified 710 A.27 genomes in Germany as of 2 May 2021, with a vast majority identified in laboratories from a ...
Sébastien Calvignac-Spencer +10 more
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