A public HTLV-1 molecular epidemiology database for sequence management and data mining. [PDF]
PLoS ONE, 2012 BACKGROUND: It is estimated that 15 to 20 million people are infected with the human T-cell lymphotropic virus type 1 (HTLV-1). At present, there are more than 2,000 unique HTLV-1 isolate sequences published.
Thessika Hialla Almeida Araujo +9 more
doaj +6 more sources
Molecular BioComputing Suite: A Word Processor Add-In for the Analysis and Manipulation of Nucleic Acid and Protein Sequence Data [PDF]
BioTechniques, 2001 In all fields of molecular biology, researchers are increasingly challenged by experiments planned and evaluated on the basis of nucleic acid and protein sequence data generally retrieved from public databases.
Patrick Y. Muller +2 more
doaj +2 more sources
SEView: A Java Applet for Browsing Molecular Sequence Data
In Silico Biology: Journal of Biological Systems Modeling and Multi-Scale Simulation, 1998 SEView is a Java applet that represents known or predicted elements of a protein or nucleotide sequence. It replaces or supplements the textual format of databases or program output with an interactive, graphical representation that is easily available ...
Thomas Junier, P. Bucher
semanticscholar +3 more sources
Analysis of recombination in molecular sequence data
, 2008 Wir präsentieren Recco, eine neue und schnelle Methode zur Analyse von Rekombinationen in multiplen Alignments. Recco basiert auf einem dynamischen Programm, welches eine Sequenz im Alignment durch die anderen Sequenzen im Alignment rekonstruiert, wobei die Operatoren Mutation und Rekombination erlaubt sind.
Jochen Maydt
semanticscholar +4 more sources
Population Subdivision and Molecular Sequence Variation: Theory and Analysis ofDrosophila ananassaeData [PDF]
Genetics, 2003 AbstractPopulation subdivision complicates analysis of molecular variation. Even if neutrality is assumed, three evolutionary forces need to be considered: migration, mutation, and drift. Simplification can be achieved by assuming that the process of migration among and drift within subpopulations is occurring fast compared to mutation and drift in the
Claus Vogl +4 more
openalex +4 more sources
Extracting Dwell Time Sequences from Processive Molecular Motor Data [PDF]
Biophysical Journal, 2006 Processive molecular motors, such as kinesin, myosin, or dynein, convert chemical energy into mechanical energy by hydrolyzing ATP. The mechanical energy is used for moving in discrete steps along the cytoskeleton and carrying a molecular load. Single-molecule recordings of motor position along a substrate polymer appear as a stochastic staircase ...
Lorin S. Milescu +3 more
openalex +5 more sources
Phylogenetic diversity of insecticolous fusaria inferred from multilocus DNA sequence data and their molecular identification via FUSARIUM-ID and Fusarium MLST [PDF]
Mycologia, 2012 We constructed several multilocus DNA sequence datasets to assess the phylogenetic diversity of insecticolous fusaria, especially focusing on those housed at the Agricultural Research Service Collection of Entomopathogenic Fungi (ARSEF), and to aid ...
Kerry O’Donnell +10 more
openalex +2 more sources
Molecular phylogeny of Asian Meconopsis based on nuclear ribosomal and chloroplast DNA sequence data. [PDF]
PLoS ONE, 2014 The taxonomy and phylogeny of Asian Meconopsis (Himalayan blue poppy) remain largely unresolved. We used the internal transcribed spacer (ITS) region of nuclear ribosomal DNA (nrDNA) and the chloroplast DNA (cpDNA) trnL-F region for phylogenetic ...
Yu-Cheng Liu +3 more
doaj +5 more sources
Impact of molecular sequence data completeness on HIV cluster detection and a network science approach to enhance detection. [PDF]
Sci Rep, 2022 Mazrouee S +8 more
europepmc +3 more sources
A Model Information Management Plan for Molecular Pathology Sequence Data Using Standards [PDF]
The Journal of Molecular Diagnostics, 2019 Incorporating genetic variant data into the electronic health record (EHR) in discrete computable fashion has vexed the informatics community for years. Genetic sequence test results are typically communicated by the molecular laboratory and stored in the EHR as textual documents. Although text documents are useful for human readability and initial use,
W. Scott Campbell +7 more
openalex +4 more sources