Results 41 to 50 of about 1,764,656 (301)

Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data

Biodiversity Data Journal, 2016
We demonstrate how a classical taxonomic description of a new species can be enhanced by applying new generation molecular methods, and novel computing and imaging technologies.
Pavel Stoev, Ana Komerički, Nesrine Akkari, Shanlin Liu, Xin Zhou, Alexander Weigand, Jeroen Hostens, Christopher Hunter, Scott Edmunds, David Porco, Marzio Zapparoli, Teodor Georgiev, Daniel Mietchen, David Roberts, Sarah Faulwetter, Vincent Smith, Lyubomir Penev   +16 more
doaj   +3 more sources

Learning the Regulatory Code of Gene Expression

Frontiers in Molecular Biosciences, 2021
Data-driven machine learning is the method of choice for predicting molecular phenotypes from nucleotide sequence, modeling gene expression events including protein-DNA binding, chromatin states as well as mRNA and protein levels.
Jan Zrimec, Filip Buric, Mariia Kokina, Mariia Kokina, Victor Garcia, Aleksej Zelezniak, Aleksej Zelezniak   +6 more
doaj   +1 more source

AlphaFold Protein Structure Database for Sequence-Independent Molecular Replacement

Crystals, 2021
Crystallographic phasing recovers the phase information that is lost during a diffraction experiment. Molecular replacement is a commonly used phasing method for crystal structures in the protein data bank.
Lawrence Chai, Ping Zhu, Jin Chai, Changxu Pang, Babak Andi, Sean McSweeney, John Shanklin, Qun Liu   +7 more
doaj   +1 more source

Molecular Phylogenetics of Poaceae: An Expanded Analysis ofrbcL Sequence Data

Molecular Phylogenetics and Evolution, 1996
Phylogenetic analyses of rbcL sequence data from grasses are presented, extending the work of an earlier study. Based on molecular evidence that Joinvilleaceae and Restionaceae are closely allied to Poaceae, species from these families and from a distantly related dicot were variously employed as outgroups and analyzed with 23 species of Poaceae using ...
M R, Duvall, B R, Morton
openaire   +2 more sources

Molecular Sequence Data of Hepatitis B Virus and Genetic Diversity After Vaccination [PDF]

American Journal of Epidemiology, 2009
The effect of vaccination programs on transmission of infectious disease is usually assessed by monitoring programs that rely on notifications of symptomatic illness. For monitoring of infectious diseases with a high proportion of asymptomatic cases or a low reporting rate, molecular sequence data combined with modern coalescent-based techniques offer ...
van Ballegooijen, WMrivm, van den Houdt, R, Bruisten, SM, Boot, HJrivm, Coutinho, RArivm, Wallinga, Jrivm   +5 more
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BEAST: Bayesian evolutionary analysis by sampling trees

BMC Evolutionary Biology, 2007
Background The evolutionary analysis of molecular sequence variation is a statistical enterprise. This is reflected in the increased use of probabilistic models for phylogenetic inference, multiple sequence alignment, and molecular population genetics ...
Drummond Alexei J, Rambaut Andrew
doaj   +1 more source

Molecular Etiology of Isolated Congenital Cataract Using Next-Generation Sequencing: Single Center Exome Sequencing Data from Turkey [PDF]

Molecular Syndromology, 2020
Congenital cataract, which refers to lenticular opacity diagnosed at birth or more commonly during the first year of life, is one of the leading causes of childhood blindness. Molecular understanding of the disease pathogenesis has evolved thanks to many studies based on modern technologies. In this study, we aimed to identify and discuss the molecular
Hande Taylan Sekeroglu, Beren Karaosmanoglu, Ekim Z. Taskiran, Pelin O. Simsek Kiper, Mehmet Alikasifoglu, Koray Boduroglu, Turgay Coskun, Gulen Eda Utine   +7 more
openaire   +2 more sources

Southern-by-Sequencing: A Robust Screening Approach for Molecular Characterization of Genetically Modified Crops

The Plant Genome, 2015
Molecular characterization of events is an integral part of the advancement process during genetically modified (GM) crop product development. Assessment of these events is traditionally accomplished by polymerase chain reaction (PCR) and Southern blot ...
Gina M. Zastrow-Hayes, Haining Lin, Amy L. Sigmund, Jenna L. Hoffman, Clara M. Alarcon, Kevin R. Hayes, Todd A. Richmond, Jeffery A. Jeddeloh, Gregory D. May, Mary K. Beatty   +9 more
doaj   +1 more source

Phylogeny of Kinorhyncha Based on Morphology and Two Molecular Loci. [PDF]

PLoS ONE, 2015
The phylogeny of Kinorhyncha was analyzed using morphology and the molecular loci 18S rRNA and 28S rRNA. The different datasets were analyzed separately and in combination, using maximum likelihood and Bayesian Inference.
Martin V Sørensen, Matteo Dal Zotto, Hyun Soo Rho, Maria Herranz, Nuria Sánchez, Fernando Pardos, Hiroshi Yamasaki   +6 more
doaj   +1 more source

Classification of molecular sequence data using Bayesian phylogenetic mixture models [PDF]

Computational Statistics & Data Analysis, 2014
Rate variation among the sites of a molecular sequence is commonly found in applications of phylogenetic inference. Several approaches exist to account for this feature but they do not usually enable the investigator to pinpoint the sites that evolve under one or another rate of evolution in a straightforward manner.
Loza-Reyes, E., Hurn, M. A., Robinson, A.   +2 more
openaire   +2 more sources