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E-PROBCONS: Enhanced PROBCONS for Multiple Sequence Alignment [PDF]
IJCI International Journal of Computers and Information, 2020 — the perfect alignment between three or more sequences of protein, RNA or DNA is a very difficult task in Bioinformatics. There are many techniques for alignment of multiple sequences.
arabi keshk, Hamdy Mousa, Eman Mohamed
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Recursive MAGUS: Scalable and accurate multiple sequence alignment. [PDF]
PLoS Computational Biology, 2021 Multiple sequence alignment tools struggle to keep pace with rapidly growing sequence data, as few methods can handle large datasets while maintaining alignment accuracy.
Vladimir Smirnov
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Advances in post-processing methods for multiple sequence alignment [PDF]
Frontiers in GeneticsThe reliability of multiple sequence alignment (MSA) results directly determines the credibility of the conclusions drawn from biological research. However, MSA is inherently an NP-hard problem, making it theoretically impossible to guarantee a globally ...
Yixiao Zhai +3 more
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Progressive multiple sequence alignment with indel evolution [PDF]
BMC Bioinformatics, 2018 Background Sequence alignment is crucial in genomics studies. However, optimal multiple sequence alignment (MSA) is NP-hard. Thus, modern MSA methods employ progressive heuristics, breaking the problem into a series of pairwise alignments guided by a ...
Massimo Maiolo +3 more
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On the Edge of Web-Based Multiple Sequence Alignment Services
Tsinghua Science and Technology, 2012 There are many web-based multiple sequence alignment services accessible around the world. However, many researchers working on biological sequence analysis still struggle with inefficient, unfriendly user interface, and limited capability multiple ...
Ken D. Nguyen
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A layout framework for genome-wide multiple sequence alignment graphs [PDF]
Frontiers in BioinformaticsSequence alignments are often used to analyze genomic data. However, such alignments are often only calculated and compared on small sequence intervals for analysis purposes.
Jeremias Schebera +3 more
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ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference. [PDF]
PLoS Biol, 2020 Steenwyk JL +4 more
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EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment
Algorithms for Molecular Biology, 2023 Background Adding sequences into an existing (possibly user-provided) alignment has multiple applications, including updating a large alignment with new data, adding sequences into a constraint alignment constructed using biological knowledge, or ...
Chengze Shen +3 more
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Recent evolutions of multiple sequence alignment algorithms.
PLoS Computational Biology, 2007 Cédric Notredame
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Frontiers in Genetics, 2021 As a key algorithm in bioinformatics, sequence alignment algorithm is widely used in sequence similarity analysis and genome sequence database search.
Haipeng Shi +3 more
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