Results 31 to 40 of about 101,026 (352)

Carbon nanopores for DNA sequencing: a review on nanopore materials

open access: yesChemical Communications, 2023
Herein, we review the recent progress and achievements in carbon nanopore sequencing based on materials, including the selection of carbon nanomaterials, technologies for nanopore formation, and future perspectives of carbon nanopore sequencing.
Jing Xu, Xin Jiang, Nianjun Yang
openaire   +3 more sources

Nanopore sequencing technology and its applications

open access: yesMedComm, 2023
Since the development of Sanger sequencing in 1977, sequencing technology has played a pivotal role in molecular biology research by enabling the interpretation of biological genetic codes.
Peijie Zheng   +6 more
semanticscholar   +1 more source

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

open access: yesNature Methods, 2021
Long-read sequencing has the potential to transform variant detection by reaching currently difficult-to-map regions and routinely linking together adjacent variations to enable read-based phasing.
Kishwar Shafin   +13 more
semanticscholar   +1 more source

MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets

open access: yesFrontiers in Genetics, 2020
The direct RNA sequencing platform offered by Oxford Nanopore Technologies allows for direct measurement of RNA molecules without the need of conversion to complementary DNA, fragmentation or amplification.
Luca Cozzuto   +12 more
doaj   +1 more source

LAFITE Reveals the Complexity of Transcript Isoforms in Subcellular Fractions

open access: yesAdvanced Science, 2023
Characterization of the subcellular distribution of RNA is essential for understanding the molecular basis of biological processes. Here, the subcellular nanopore direct RNA‐sequencing (DRS) of four lung cancer cell lines (A549, H1975, H358, and HCC4006)
Jizhou Zhang   +7 more
doaj   +1 more source

Targeted nanopore sequencing with Cas9-guided adaptor ligation

open access: yesNature Biotechnology, 2020
Despite recent improvements in sequencing methods, there remains a need for assays that provide high sequencing depth and comprehensive variant detection.
Timothy Gilpatrick   +9 more
semanticscholar   +1 more source

Interchromosomal template-switching as a novel molecular mechanism for imprinting perturbations associated with Temple syndrome

open access: yesGenome Medicine, 2019
Background Intrachromosomal triplications (TRP) can contribute to disease etiology via gene dosage effects, gene disruption, position effects, or fusion gene formation.
Claudia M. B. Carvalho   +21 more
doaj   +1 more source

Accurate Detection of HPV Integration Sites in Cervical Cancer Samples Using the Nanopore MinION Sequencer Without Error Correction

open access: yesFrontiers in Genetics, 2020
During the carcinogenesis of cervical cancer, the DNA of human papillomavirus (HPV) is frequently integrated into the human genome, which might be a biomarker for the early diagnosis of cervical cancer.
Wenjuan Yang   +10 more
doaj   +1 more source

Zero-mode waveguides and nanopore-based sequencing technologies accelerate single-molecule studies

open access: yesBiophysics and Physicobiology, 2022
Single-molecule technologies can provide detailed information regarding molecular mechanisms and interactions that cannot easily be studied on the bulk scale; generally, individual molecular behaviors cannot be distinguished, and only average ...
Ryo Iizuka   +2 more
doaj   +1 more source

Crystal structure of an invertebrate cytolysin pore reveals unique properties and mechanism of assembly

open access: yesNature Communications, 2016
Pore-forming toxins act by forming oligomeric pores in lipid membranes. Here the authors report the crystal structure of the lysenin pore, providing insights into the assembly and function of the pore in addition to suggesting that its properties make ...
Marjetka Podobnik   +18 more
doaj   +1 more source

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