Results 41 to 50 of about 70,205 (303)

High Prevalence of blaCTXM–1/IncI1-Iγ/ST3 Plasmids in Extended-Spectrum β-Lactamase-Producing Escherichia coli Isolates Collected From Domestic Animals in Guadeloupe (French West Indies)

Frontiers in Microbiology, 2022
Extended-spectrum β-lactamase-producing Enterobacteriaceae (ESBL-E) have been classified in the group of resistant bacteria of highest priority. We determined the prevalence of ESBL-E collected in feces from household and shelter pets in Guadeloupe ...
Gaëlle Gruel, David Couvin, Stéphanie Guyomard-Rabenirina, Guillaume Arlet, Jean-Christophe Bambou, Matthieu Pot, Xavier Roy, Antoine Talarmin, Benoit Tressieres, Séverine Ferdinand, Sébastien Breurec, Sébastien Breurec, Sébastien Breurec   +12 more
doaj   +1 more source

Carbon nanopores for DNA sequencing: a review on nanopore materials

Chemical Communications, 2023
Herein, we review the recent progress and achievements in carbon nanopore sequencing based on materials, including the selection of carbon nanomaterials, technologies for nanopore formation, and future perspectives of carbon nanopore sequencing.
Jing Xu, Xin Jiang, Nianjun Yang
openaire   +3 more sources

JXing-Lab/nanopore-sv-evaluation: Code and data

, 2019
This release contains codes and data used for the publication "Evaluating nanopore sequencing data processing pipelines for structure variation identification".
Xing Lab of Genomics
core   +1 more source

A Simple and Cost-Effective Nanopore Fabrication Platform with Microcontroller Technology [PDF]

, 2023
With growing interest in solid-state nanopore sensing—a single molecule technique capable of profiling a host of analyte classes—establishing facile and scalable approaches for fabricating molecular size pores is gaining considerable traction.
Patrick, Kluth, Shankar, Dutt, Buddini, Karawdeniya, Antonio, Tricoli, Y.M. Nuwan, D.Y. Bandara   +4 more
core   +1 more source

MinION Nanopore Sequencing Enables Correlation between Resistome Phenotype and Genotype of Coliform Bacteria in Municipal Sewage

Frontiers in Microbiology, 2017
Wastewater treatment plants (WWTPs) functioned as the intersection between the human society and nature environment, are receiving increasingly more attention on risk assessment of the acquisition of environmental antibiotic resistance genes (ARGs) by ...
Yu Xia, An-Dong Li, Yu Deng, Xiao-Tao Jiang, Li-Guan Li, Tong Zhang   +5 more
doaj   +1 more source

Ultrarapid and high-resolution HLA class I typing using transposase-based nanopore sequencing applied in pharmacogenetic testing

Frontiers in Genetics, 2023
Nanopore sequencing has been examined as a method for rapid and high-resolution human leukocyte antigen (HLA) typing in recent years. We aimed to apply ultrarapid nanopore-based HLA typing for HLA class I alleles associated with drug hypersensitivity ...
Nampeung Anukul, Piroon Jenjaroenpun, Piroon Jenjaroenpun, Chonticha Sirikul, Natnicha Wankaew, Natnicha Wankaew, Pattaraporn Nimsamer, Pattaraporn Nimsamer, Ekkapong Roothumnong, Manop Pithukpakorn, Manop Pithukpakorn, Nipapan Leetrakool, Thidathip Wongsurawat, Thidathip Wongsurawat, Thidathip Wongsurawat   +14 more
doaj   +1 more source

Genome Analysis Methods using Long Read Nanopore Sequencing [PDF]

, 2021
Third-generation long-read technologies denote the latest progression in high throughput DNA and RNA sequence analysis. Complementing the widespread second-generation short-read platforms, long-read sequencing adds unique application opportunities by ...
Giesselmann, Pay, Gießelmann, P. ; https://orcid.org/   +1 more
core   +1 more source

Single‐cell DNA methylation profiling: Technologies, computation, and applications in precision oncology

Molecular Oncology, EarlyView.
Single‐cell DNA methylation (scDNAme) profiling maps epimutational clonal evolution, revealing mechanisms of malignancy and therapeutic resistance across diverse cancer types. By providing a high‐resolution landscape of intratumoral heterogeneity, these technologies empower precise patient stratification, guide the development of enhanced ...
Ik Soo Kim
wiley   +1 more source

Assessing FOXA1-driven mRNA processing in prostate cancer with Nanopore long-read sequencing

, 2022
Despite advances in the diagnosis and treatment of early stage of prostate cancer (PC), there are few therapeutic options for end-stage metastatic castration-resistant PC.
Matteo Cereda
core   +2 more sources

High resolution long-read telomere sequencing reveals dynamic mechanisms in aging and cancer

Nature Communications
Telomeres are the protective nucleoprotein structures at the end of linear eukaryotic chromosomes. Telomeres’ repetitive nature and length have traditionally challenged the precise assessment of the composition and length of individual human telomeres ...
Tobias T. Schmidt, Carly Tyer, Preeyesh Rughani, Candy Haggblom, Jeffrey R. Jones, Xiaoguang Dai, Kelly A. Frazer, Fred H. Gage, Sissel Juul, Scott Hickey, Jan Karlseder   +10 more
doaj   +1 more source