Results 201 to 210 of about 63,196 (293)

Characterization of the dynamic microbiome evolution across thrips species

Insect Science, EarlyView.
Comprehensive survey of the microbiome in thrips. The dominant bacterial genera found in thrips include intracellular ones, such as Wolbachia and Spiroplasma, and extracellular ones, including Serratia, Pantoea, and Acinetobacter. We isolated and sequenced high‐quality genomes of two dominant symbionts, Pantoea dispersa and Serratia marcescens.
Xiaodi Hu, Zhaohui Shi, Yangwei Gao, Hanze Zheng, Lin Lin, Jian‐Ping Chen, Yong Chen, Chuan‐Xi Zhang, Yiyuan Li   +8 more
wiley   +1 more source

Unlocking the full potential of nanopore sequencing: tips, tricks, and advanced data analysis techniques. [PDF]

Nucleic Acids Res
Meyer D, Goettsch W, Spangenberg J, Stieber B, Krautwurst S, Hölzer M, Brandt C, Linde J, Höner Zu Siederdissen C, Srivastava A, Zarkovic M, Wollny D, Marz M.   +12 more
europepmc   +1 more source

Decoding Dual Regulatory Layers: Integrating Differential Expression and Alternative Splicing Dynamics in the Evolution of Laryngeal Echolocation Across Chiropteran Lineages

Integrative Zoology, EarlyView.
We integrated short‐read and long‐read RNA‐seq data from cochlear tissues of echolocating and non‐echolocating bats to disentangle transcriptional and post‐transcriptional regulation. Echolocating bats showed neural‐function enrichment among differentially expressed genes, while alternatively spliced genes were linked to epigenetic regulation. Overlaps
Jianyu Wu, Daoyuan Hu, Min Chen, Xiuguang Mao   +3 more
wiley   +1 more source

A comprehensive benchmarking of adaptive sampling tools for nanopore sequencing. [PDF]

Genome Biol
Yang L, Lin Y, Li P, Wang K, Li J, Liu Y, Bo X, Ni M, Li P, Song H.   +9 more
europepmc   +1 more source

From short to long: The impact of read length on metagenome assembly and binning

Methods in Ecology and Evolution, EarlyView.
Abstract Metagenome sequencing not only plays a pivotal role in unravelling the genetic diversity and functional potential of microbial communities but also facilitates the discovery of genome context for microbial dark matter. This study presents a comparative analysis of metagenome sequencing strategies, focusing on the impact of read length on the ...
Xi Peng, Xingsheng Yang, Danrui Wang, Bo Zhao, Kai Feng, Qing He, Shang Wang, Ye Deng   +7 more
wiley   +1 more source

cuteSV-OL: a real-time structural variation detection framework for nanopore sequencing devices. [PDF]

Bioinformatics
Guo W, Liu Y, Wang Y, Jiang T.
europepmc   +1 more source

The grapevine microbiota: A review on the possible impacts of plant protection programs on phyllosphere microorganisms

Annals of Applied Biology, EarlyView.
This review highlights recent advances in understanding how plant protection programs and alternative fungicides affect the taxonomic composition of the grapevine phyllosphere microbiota. Bacterial and fungal communities are primarily shaped by the plant compartment, vineyard location, and sampling time. Plant protection programs generally have a minor
Sofia Montanari, Anna Smaldone, Veronica Castellari, Claudia M. O. Longa, Michael Oberhuber, Peter Robatscher, Michele Perazzolli   +6 more
wiley   +1 more source

The applications and advantages of nanopore sequencing in bacterial antimicrobial resistance surveillance and research. [PDF]

NPJ Antimicrob Resist
Peng K, Li C, Wang Q, Xin X, Wang Z, Li R.   +5 more
europepmc   +1 more source

Single‐Cell Omics Analysis of Human Basophils Reveals Two Transcriptionally Distinct Populations

Allergy, EarlyView.
Integrated single‐cell transcriptomics and large‐scale immunophenotyping reveal the molecular landscape of human basophils. Circulating basophils comprise two transcriptionally distinct populations. A user‐friendly web resource enables interactive exploration of the generated data.
Sofia Papavasileiou, Jiezhen Mo, Daryl Boey, Chenyan Wu, Magnus Tronstad, Lucille Margerie, Remi‐André Olsen, Jörg A. Bachmann, Jing Hui Low, Jocelyn Ong, Lars Heede Blom, Anand Kumar Andiappan, Gunnar Nilsson, Joakim S. Dahlin   +13 more
wiley   +1 more source

Performance Evaluation of Targeted Nanopore Sequencing in Non-Tuberculous Mycobacteria Identification: A Comparative Study in Shenzhen, China. [PDF]

Infect Drug Resist
Gui J, Long C, Fu Y, He H, Li J, Wang F.
europepmc   +1 more source