Results 1 to 10 of about 73,616 (310)
Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis
Nature Communications, 2021 Nanopore sequencing technologies applied to transcriptome analysis suffer from high error rates, limiting them largely to reference-based analyses. Here, the authors develop a computational error correction method for transcriptome analysis that reduces ...
Kristoffer Sahlin +3 more
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Genome Biology, 2021 We develop the Oncogene Concatenated Enriched Amplicon Nanopore Sequencing (OCEANS) method, in which variants with low variant allele frequency (VAFs) are amplified and subsequently concatenated for Nanopore Sequencing.
Deepak Thirunavukarasu +8 more
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Matched Oxford Nanopore Technologies and Bisulfite Sequencing of the GM24385 Cell Line
, 2022 One of the most widespread genomic modifications is 5-methylcytosine (5mC), which most frequently occurs at CpG dinucleotides. Compared to whole-genome bisulfite sequencing, the traditional method of 5mC detection, nanopore technology can offer many ...
Oxford Nanopore Technologies
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Nanopore-Enabled Dark-Field Digital Sensing of Nanoparticles
, 2023 In this study, we use nanopore arrays as a platform for detecting and characterizing individual nanoparticles (NPs) in real time. Dark-field imaging of nanopores with dimensions smaller than the wavelength of light occurs under conditions where trans ...
Jarek Metro (16876737) +8 more
core +2 more sources
Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice
Genome Biology, 2020 Background The circum-basmati group of cultivated Asian rice (Oryza sativa) contains many iconic varieties and is widespread in the Indian subcontinent.
Jae Young Choi +8 more
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Frontiers in Energy Research, 2021 Two-dimensional nanopores are very promising for high-permeance molecular sieving, but the molecular backflow from permeate-side to feed-side is not beneficial for improving molecular permeance.
Chengzhen Sun +3 more
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Journal of Nanoscience and Nanotechnology, 2002 The current review article attempts to cover the field of nanoporous materials, thereby materials with voids of the order of 1 nm to 100 nm or even larger. Concepts, that have an effect on a more general basis, are introduced and the common features among the different classes of nanoporous materials are demonstrated enabling understanding their ...
Polarz, Sebastian, Smarsly, Bernd
openaire +4 more sources
Pore Structures for High-Throughput Nanopore Devices
Micromachines, 2020 Nanopore devices are expected to advance the next-generation of nanobiodevices because of their strong sensing and analyzing capabilities for single molecules and bioparticles. However, the device throughputs are not sufficiently high.
Sou Ryuzaki +2 more
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Barcode demultiplexing of nanopore sequencing raw signals by unsupervised machine learning
Frontiers in Bioinformatics, 2023 Introduction: Oxford Nanopore Technologies (ONT) is a third generation sequencing approach that allows the analysis of individual, full-length nucleic acids. ONT records the alterations of an ionic current flowing across a nano-scaled pore while a DNA or
Daniele M. Papetti +19 more
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