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Methods for thermal denaturation studies of nucleic acids in complex with fluorogenic dyes
Thermal denaturation is a common technique in the biophysical study of nucleic acids. These experiments are typically performed by monitoring the increase in absorbance (hyperchromism) of a sample at 260nm with temperature (Mergny & Lacroix, 2003; Puglisi & Tinoco, 1989).
Lauren M. Aufdembrink+5 more
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Dynamics and structure of water network around nucleic acid have been subjects of intensive studies due to their contributions to biological process. Here, we identified spatiotemporal features of DNA hydration through examining fully-hydrated DNA solutions by THz spectroscopy. The results suggest the presence of weakly bound water beyond tight-binding
Heyjin Son+7 more
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The denaturation of desoxypentose nucleic acid
Paul Doty, Stuart A. Rice
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The Alkaline Denaturation of Deoxyribose Nucleic Acid
Paul Ehrlich, Paul Doty
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Les chaines complementaires de la molecule d’ADN, qui sont liees l’une a l’autre par des liaisons hydrogene au niveau des paires de bases adenine-thymine et guanine-cytosine, peuvent etre separees par l’action de la chaleur, d’un acide, d’une base ou du formamide.
Julius Marmur+2 more
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At high binding densities acridine orange (AO) forms complexes with ds DNA which are insoluble in aqueous media. These complexes are characterized by high red- and minimal green-luminescence, 1:1 (dye/P) stoichiometry and resemble complexes of AO with ss nucleic acids.
Jan Kapuściński+1 more
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Studies on the Structure of Nucleic Acids. X. On the Mechanism of Denaturation1
Liebe F. Cavalieri+2 more
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Pyridine: a Denaturant or Stabilizer of Spherical Nucleic Acids?
Analytical Chemistry, 2017The spotlighted dual functions of pyridine as a denaturant and as a stabilizer for duplex DNA are thoroughly investigated using spherical nucleic acids (SNAs). At neutral pH, pyridine destabilizes the duplex interconnects of assembled SNAs, resulting in a gradual decrease in their melting temperature (Tm) as a function of the pyridine concentration ...
Yoon Hyuck Kim+3 more
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Microfluidic chip of fast DNA hybridization using denaturing and motion of nucleic acids [PDF]
AbstractThis study presents the effect of fluidic temperatures and velocities on improving DNA hybridization. The efficiency of hybridization could be improved by introducing elevated temperature in the hot region and velocity in the cold region. Compared with the conventional methods, this hybridization microchip was able to increase the hybridization
Li-Wei Lai+5 more
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ChemBioChem, 2004
AbstractIntercalating nucleic acids (INA®s) with insertions of (R)‐1‐O‐(1‐pyrenylmethyl)glycerol were hybridized with locked nucleic acids (LNAs). INA/LNA duplexes were found to be less stable than the corresponding DNA/LNA duplexes when the INA monomer was inserted as a bulge close to the LNA monomers in the opposite strand.
Filichev, V.V.+5 more
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AbstractIntercalating nucleic acids (INA®s) with insertions of (R)‐1‐O‐(1‐pyrenylmethyl)glycerol were hybridized with locked nucleic acids (LNAs). INA/LNA duplexes were found to be less stable than the corresponding DNA/LNA duplexes when the INA monomer was inserted as a bulge close to the LNA monomers in the opposite strand.
Filichev, V.V.+5 more
openaire +4 more sources