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Nucleotide Excision Repair

open access: yesDefinitions, 2006
European Bioinformatics Institute, New York University Langone Medical Center, Ontario Institute for Cancer Research, Oregon Health and Science University.
W. Mcgregor
openaire   +3 more sources

HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution [PDF]

open access: yesNeural Information Processing Systems, 2023
Genomic (DNA) sequences encode an enormous amount of information for gene regulation and protein synthesis. Similar to natural language models, researchers have proposed foundation models in genomics to learn generalizable features from unlabeled genome ...
Eric D Nguyen   +12 more
semanticscholar   +1 more source

The Intersection of Purine and Mitochondrial Metabolism in Cancer

open access: yesCells, 2021
Nucleotides are essential to cell growth and survival, providing cells with building blocks for DNA and RNA, energy carriers, and cofactors. Mitochondria have a critical role in the production of intracellular ATP and participate in the generation of ...
Humberto De Vitto   +3 more
doaj   +1 more source

Ribose 5-phosphate: the key metabolite bridging the metabolisms of nucleotides and amino acids during stringent response in Escherichia coli?

open access: yesMicrobial Cell, 2023
The bacterial stringent response and its effector alarmone guanosine penta- or tetra – phosphates (p)ppGpp are vital for bacterial tolerance and survival of various stresses in environments (including antibiotics) and host cells (viru-lence).
Paulina Katarzyna Grucela   +4 more
doaj   +1 more source

Minimap2: pairwise alignment for nucleotide sequences [PDF]

open access: yesBioinform., 2017
Motivation Recent advances in sequencing technologies promise ultra-long reads of ∼100 kb in average, full-length mRNA or cDNA reads in high throughput and genomic contigs over 100 Mb in length.
Heng Li
semanticscholar   +1 more source

N-glycosylation of UNC93B1 at a Specific Asparagine Residue Is Required for TLR9 Signaling

open access: yesFrontiers in Immunology, 2022
Toll-like receptors (TLRs) play critical roles in the first line of host defense against pathogens through recognition of pathogen-associated molecular patterns and initiation of the innate immune responses.
Hyun-Sup Song   +10 more
doaj   +1 more source

Influence of Citrate and Phosphate on the Adsorption of Adenosine-5′-Monophosphate at the Hematite Water Interface

open access: yesFrontiers in Environmental Science, 2022
Nucleic acid derived organic phosphorus (Po) is an important source of plant available P when degraded to inorganic phosphate (P(V)i). It is known that when nucleic acids or components are adsorbed on mineral surfaces, the enzymatic degradation is ...
Sudipta Rakshit   +3 more
doaj   +1 more source

Agreement of aptamer proteomics with standard methods for measuring venous thrombosis biomarkers

open access: yesResearch and Practice in Thrombosis and Haemostasis, 2021
Background Venous thromboembolism (VTE) is a complex disease with an incidence rate of about 1 in 1000 per year. Despite the availability of validated biomarkers for VTE, unprovoked events account for 50% of first events.
Tariq Faquih   +5 more
doaj   +1 more source

Small Molecule CD38 Inhibitors: Synthesis of 8-Amino-N1-inosine 5′-monophosphate, Analogues and Early Structure-Activity Relationship

open access: yesMolecules, 2021
Although a monoclonal antibody targeting the multifunctional ectoenzyme CD38 is an FDA-approved drug, few small molecule inhibitors exist for this enzyme that catalyzes inter alia the formation and metabolism of the N1-ribosylated, Ca2+-mobilizing ...
Joanna M. Watt   +2 more
doaj   +1 more source

Nucleotide metabolism: a pan-cancer metabolic dependency

open access: yesNature Reviews. Cancer, 2023
Overactive nucleotide synthesis is a hallmark of cancers and inhibitors of nucleotide synthesis pathways have shown promise in some cancer types. In this Review, Mullen and Singh give an overview of the role of aberrant nucleotide synthesis in supporting
Nick Mullen, Pankaj K Singh
semanticscholar   +1 more source

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