Results 31 to 40 of about 71,620 (260)

The Cancer Omics Atlas: an integrative resource for cancer omics annotations [PDF]

open access: yesBMC Medical Genomics, 2018
The Cancer Genome Atlas (TCGA) is an important data resource for cancer biologists and oncologists. However, a lack of bioinformatics expertise often hinders experimental cancer biologists and oncologists from exploring the TCGA resource. Although a number of tools have been developed for facilitating cancer researchers to utilize the TCGA data, these ...
Qingrong Sun   +2 more
openaire   +3 more sources

Data Integration in Poplar: ‘Omics Layers and Integration Strategies

open access: yesFrontiers in Genetics, 2019
Populus trichocarpa is an important biofuel feedstock that has been the target of extensive research and is emerging as a model organism for plants, especially woody perennials. This research has generated several large ‘omics datasets. However, only few
Deborah Weighill   +6 more
doaj   +1 more source

A Graph-Based Deep Learning Framework with Gating and Omics-Linked Attention for Multi-Omics Integration and Biomarker Discovery

open access: yesBiology
Integration of multi-omics data provides a comprehensive perspective on complex biological systems, facilitating advances in disease classification and biomarker discovery.
Zhanpeng Huang   +3 more
doaj   +1 more source

Totoro: Identifying Active Reactions During the Transient State for Metabolic Perturbations

open access: yesFrontiers in Genetics, 2022
Motivation: The increasing availability of metabolomic data and their analysis are improving the understanding of cellular mechanisms and how biological systems respond to different perturbations.
Mariana Galvão Ferrarini   +13 more
doaj   +1 more source

Integrated OMICS tools for personalised medicine [PDF]

open access: yesThe Journal of Headache and Pain, 2015
System-wide adoption of Personalised Healthcare requires an active and flexible but highly integrated infrastructure, joining many different competences and technologies and allowing continuous upgrading, also through self-learning processes. In this system, clinics and diagnostics would no longer be partitioned, according to a stepwise scheme, from ...
Borro, Marina   +3 more
openaire   +2 more sources

ArrayTrack: a free FDA bioinformatics tool to support emerging biomedical research -- an update

open access: yesHuman Genomics, 2010
ArrayTrack™is a Food and Drug Administration (FDA) bioinformatics tool that has been widely adopted by the research community for genomics studies. It provides an integrated environment for microarray data management, analysis and interpretation. Most of
Xu Joshua   +3 more
doaj   +1 more source

Integration of the Microbiome, Metabolome and Transcriptome Reveals Escherichia coli F17 Susceptibility of Sheep

open access: yesAnimals, 2023
Escherichia coli (E. coli) F17 is one of the most common pathogens causing diarrhea in farm livestock. In the previous study, we accessed the transcriptomic and microbiomic profile of E.
Weihao Chen   +10 more
doaj   +1 more source

Integrative omics - from data to biology

open access: yesExpert Review of Proteomics, 2018
Multi-omic approaches are promising a broader view on cellular processes and a deeper understanding of biological systems. with strongly improved high-throughput methods the amounts of data generated have become huge, and their handling challenging. Area Covered: New bioinformatic tools and pipelines for the integration of data from different omics ...
Dihazi, H.   +12 more
openaire   +6 more sources

MIntO: A Modular and Scalable Pipeline For Microbiome Metagenomic and Metatranscriptomic Data Integration

open access: yesFrontiers in Bioinformatics, 2022
Omics technologies have revolutionized microbiome research allowing the characterization of complex microbial communities in different biomes without requiring their cultivation.
Carmen Saenz   +3 more
doaj   +1 more source

An Integrated Multi-Disciplinary Perspectivefor Addressing Challenges of the Human Gut Microbiome

open access: yesMetabolites, 2020
Our understanding of the human gut microbiome has grown exponentially. Advances in genome sequencing technologies and metagenomics analysis have enabled researchers to study microbial communities and their potential function within the context of a range
Rohan M. Shah   +6 more
doaj   +1 more source

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