Results 31 to 40 of about 162,248 (282)

Maize Anther Development Involves Translated Open Reading Frames From 3′ Untranslated Regions [PDF]

Advanced Science
Few studies have explored the functions of peptides encoded by open reading frames (ORFs) in annotated noncoding regions, particularly the 3′ untranslated regions (3′ UTRs).
Chunyu Wang, Yuechao Wu, Shunxi Wang, Han Liu, Siqi Jiang, Yingjia Han, Liuji Wu, Tao Zhang, Mei Zhang   +8 more
doaj   +2 more sources

Short internal open reading frames repress the translation of N-terminally truncated proteoforms [PDF]

EMBO Reports
Internal translation initiation sites, as revealed by ribosome profiling experiments can potentially drive the translation of many N-terminally truncated proteoforms.
Raphael Fettig, Zita Gonda, Niklas Walter, Paul Sallmann, Christiane Thanisch, Markus Winter, Susanne Bauer, Lei Zhang, Greta Linden, Margarethe Litfin, Marina Khamanaeva, Sarah Storm, Christina Münzing, Christelle Etard, Olivier Armant, Olalla Vázquez, Olivier Kassel   +16 more
doaj   +2 more sources

Open Reading Frames [PDF]

, 2022
Open reading frames for described metagenome assembled ...
Nicole Wagner (12175478), Aria Hahn (2870219)   +1 more
core   +1 more source

Identification of proteoforms of short open reading frame-encoded peptides in Blautia producta under different cultivation conditions

Microbiology Spectrum, 2023
Short open reading frames (sORF) have the potential to encode small proteins, sORF-encoded peptides (SEP), which are less than or equal to 100 amino acids in length.
Jerome Genth, Kathrin Schäfer, Liam Cassidy, Simon Graspeuntner, Jan Rupp, Andreas Tholey   +5 more
doaj   +1 more source

Non-conventional peptides in plants: From gene regulation to crop improvement

Crop Journal, 2023
Conventional peptides (CPs) and non-conventional peptides (NCPs) are generated from small open reading frames, but most CPs are derived from large precursors. NCPs, which are derived from sequences other than conventional open reading frames or annotated
Huan Chen, Jingjuan Yu, Wen-Xue Li
doaj   +1 more source

Coupled protein synthesis and ribosome-guided piRNA processing on mRNAs

Nature Communications, 2021
Ribosome can mediate piRNA biogenesis from long non-coding RNAs following translation of the short open reading frames. Here the authors show that 80S ribosome also guides piRNA production from 3’ UTR of protein-coding genes after translation of long ...
Yu H. Sun, Ruoqiao Huiyi Wang, Khai Du, Jiang Zhu, Jihong Zheng, Li Huitong Xie, Amanda A. Pereira, Chao Zhang, Emiliano P. Ricci, Xin Zhiguo Li   +9 more
doaj   +1 more source

AP - Open reading frames (ORFs) prediction [PDF]

, 2022
Open reading frames (ORFs ...
Jessica Di Martino (11662666), Tiziana Castrignanò (11657775), Pietro Libro (11653927), Marialetizia Palomba (9533876), Aurelia Rughetti (765802), Simonetta Mattiucci (11675358)   +5 more
core   +1 more source

Small Open Reading Frames: How Important Are They for Molecular Evolution?

Frontiers in Genetics, 2020
Diego Guerra-Almeida, Rodrigo Nunes-da-Fonseca, Rodrigo Nunes-da-Fonseca   +2 more
doaj   +3 more sources

Analysis methodology - Open reading frames comparative analysis [PDF]

, 2023
This repository is a guide for analyses performed in publication about Comparative analyses of Open Reading Frames between Staphylococci ...
Fatima Farhan (17413917)
core   +1 more source

OpenCustomDB: Integration of Unannotated Open Reading Frames and Genetic Variants to Generate More Comprehensive Customized Protein Databases. [PDF]

, 2023
peer reviewedProteomic diversity in biological samples can be characterized by mass spectrometry (MS)-based proteomics using customized protein databases generated from sets of transcripts previously detected by RNA-seq.
Roucou, Xavier, Perreault, Claude, Hardy, Marie-Pierre, Ehx, Grégory, Leblanc, Sébastien, Jacques, Jean-François, Brunet, Marie A, Lanoix, Joël, Guilloy, Noé, Thibault, Pierre   +9 more
core   +5 more sources