Results 81 to 90 of about 780,027 (226)

Determinants of genome-wide distribution and evolution of uORFs in eukaryotes

Nature Communications, 2021
Upstream open reading frames (uORFs) have widespread regulatory functions in eukaryotes, their genomic distribution and evolution is understudied. Here, the authors characterise ~17 million putative uORFs across 478 eukaryotic species, showing how ...
Hong Zhang, Yirong Wang, Xinkai Wu, Xiaolu Tang, Changcheng Wu, Jian Lu   +5 more
doaj   +1 more source

An unexpected gene cluster for downstream degradation of alkylphenols in Sphingomonas sp. strain TTNP3 [PDF]

, 2018
In silico analysis of nucleotide sequences flanking the recently found hydroquinone dioxygenase in Sphingomonas sp. strain TTNP3 revealed a gene cluster that encodes a hydroquinone catabolic pathway.
Corvini, Philippe, Dobrowinski, Hyazinth, Fousek, Jan, Gabriel, Frederic, Kohler, Hans-Peter, Kolvenbach, Boris, Schäffer, Andreas, Vlcek, Cestmir   +7 more
core  

Draft Genome Sequence of Saccharomonospora sp. Strain LRS4.154, a Moderately Halophilic Actinobacterium with the Biotechnologically Relevant Polyketide Synthase and Nonribosomal Peptide Synthetase Systems [PDF]

, 2017
The draft genome sequence of Saccharomonospora sp. strain LRS4.154, a moderately halophilic actinobacterium, has been determined. The genome has 4,860,108 bp, a G C content of 71.0%, and 4,525 open reading frames (ORFs).
ALONSO CARMONA, GABRIELA SCARLETT, ALONSO CARMONA, GABRIELA SCARLETT, de la Haba, Rafael R., de la Haba, Rafael R., RAMIREZ DURAN, NINFA, RAMIREZ DURAN, NINFA, SANDOVAL TRUJILLO, HORACIO, SANDOVAL TRUJILLO, HORACIO, Ventosa, Antonio, Ventosa, Antonio, Vera-Gargallo, Blanca, Vera-Gargallo, Blanca   +11 more
core   +1 more source

Diversity of Sinorhizobium (Ensifer) meliloti Bacteriophages in the Rhizosphere of Medicago marina: Myoviruses, Filamentous and N4-Like Podovirus [PDF]

, 2020
Using different Sinorhizobium meliloti strains as hosts, we isolated eight new virulent phages from the rhizosphere of the coastal legume Medicago marina.
Alías Villegas, Cynthia, Balsanelli, Eduardo, Cubo Sánchez, María Teresa, Espuny Gómez, María del Rosario, Mesa, Dany, Souza, Emanuel de   +5 more
core   +1 more source

RibORF: Identifying Genome‐Wide Translated Open Reading Frames Using Ribosome Profiling

Current Protocols in Molecular Biology, 2018
Ribosome profiling identifies RNA fragments associated with translating ribosomes. The technology provides an opportunity to examine genome‐wide translation events at single‐nucleotide resolution and in an unbiased manner.
Zhe Ji
semanticscholar   +1 more source

Complete genome sequence and taxonomic position of anguillid herpesvirus 1 [PDF]

, 2010
Eel herpesvirus or anguillid herpesvirus 1 (AngHV1) frequently causes disease in freshwater eels. The complete genome sequence of AngHV1 and its taxonomic position within the family Alloherpesviridae were determined. Shotgun sequencing revealed a 249 kbp
Abma-Henkens, M.H.C., Beurden, S.J., van, Bossers, A., Engelsma, M.Y., Haenen, O.L.M., Peeters, B.P.H., Peters, S.A., Rottier, P.J.M., Voorbergen-Laarman, H.A.   +8 more
core   +8 more sources

Author Correction: Evolutionary divergence of novel open reading frames in cichlids speciation

Scientific Reports, 2021
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Shraddha Puntambekar, Rachel Newhouse, Jaime San-Miguel, Ruchi Chauhan, Grégoire Vernaz, Thomas Willis, Matthew T. Wayland, Yagnesh Umrania, Eric A. Miska, Sudhakaran Prabakaran   +9 more
doaj   +1 more source

Genome sequence of the broad-host-range Pseudomonas phage Phi-S1 [PDF]

, 2012
The broad-host-range lytic Pseudomonas phage Φ-S1 possess a 40,192 bp double-stranded DNA (dsDNA) genome of 47 open reading frames (ORFs) and belongs to the family Podoviridae, subfamily Autographivirinae, genus T7likevirus.S.S.
Andrew M. Kropinski, Aziz, Bailey, Ermolaeva, Joana Azeredo, Kelln, Kovalyova, Laslett, Naville, Sanna Sillankorva, Schattner, Sillankorva, Sillankorva, Sillankorva, Sillankorva, Sillankorva   +15 more
core   +1 more source

Distinct types of short open reading frames are translated in plant cells

bioRxiv, 2017
Genomes contain millions of short (
I. Fesenko, I. Kirov, A. Kniazev, R. Khazigaleeva, V. Lazarev, Daria Kharlampieva, Ekaterina Grafskaia, V. Zgoda, I. Butenko, G. Arapidi, A. Mamaeva, V. Ivanov, V. Govorun   +12 more
semanticscholar   +1 more source

Small open reading frames: Not so small anymore [PDF]

Genome Research, 2006
Today, nearly 10 years after the publication of the complete sequence of the Saccharomyces cerevisiae genome, the total number of genes in this organism is largely considered resolved and currently stands at 5782 (http://www.yeastgenome.org/cache/ genomeSnapshot.html).
Richelle, Sopko, Brenda, Andrews
openaire   +2 more sources