Results 141 to 150 of about 41,121 (277)

PacBio Iso-Seq transcriptome sequencing of Diorhabda sublineata tissues

, 2022
PacBio Iso-Seq transcriptome sequencing of Diorhabda sublineata (Mediterranean tamarisk beetle) head, thorax, and abdomen of three adult females was conducted by the USDA-ARS Ag100Pest ...
United States Department of Agriculture (17854922)
core  

Recent advances in the genomics of sugarcane (Saccharum)

Journal of Integrative Plant Biology, EarlyView.
This review systematically summarizes advances in sugarcane genomics, evolution, classification, and breeding practices. It identifies key research bottlenecks and proposes an integrated research framework to facilitate predictive sugarcane breeding, which provides valuable references for genetic improvement of other complex polyploid crops.
Tianyou Wang, Qin Zhang, Qiutao Xu, Han Zhao, Zhen Li, Jisen Zhang   +5 more
wiley   +1 more source

T2T genome assembly and CRISPR/Cas9 editing of Medicago lupulina

Journal of Integrative Plant Biology, EarlyView.
A complete, gap‐free genome of Medicago lupulina, a tough, high‐protein forage legume, and a gene‐editing tool for this species, which was used to alter its leaf shape, provide key resources for improving alfalfa and breeding better forage crops for high‐altitude environments.
Qing Yuan, Cheng Li, Guangyan Wang, Wenfei Dai, Eerdungaridi, Di Wu, Qingdun Fan, Yongping Yang, Yuanwen Duan, Xudong Sun   +9 more
wiley   +1 more source

Unlocking the Potential of Metagenomics with the PacBio High-Fidelity Sequencing Technology

Microorganisms
Traditional methods for studying microbial communities have been limited due to difficulties in culturing and sequencing all microbial species. Recent advances in third-generation sequencing technologies, particularly PacBio’s high-fidelity (HiFi) sequencing, have significantly advanced metagenomics by providing accurate long-read sequences.
Yanhua Han, Jinling He, Minghui Li, Yunjuan Peng, Hui Jiang, Jiangchao Zhao, Ying Li, Feilong Deng   +7 more
openaire   +3 more sources

Assembly statistics per SMRT cell# for PacBio data using HGAP3.0 and Quiver.

, 2019
Assembly statistics per SMRT cell# for PacBio data using HGAP3.0 and Quiver.
Narjol González-Escalona (280578), Eric W. Brown (213283), Marc A. Allard (7067681), Shashi Sharma (282487), Maria Hoffmann (720254)   +4 more
core   +1 more source

Crawling under the radar: Two novel Paulinella species expand knowledge about the ecology and evolution of a primary plastid‐containing amoeba lineage

Journal of Phycology, EarlyView.
Abstract The genus Paulinella represents a rare, independent case of primary endosymbiosis, providing a unique system to study the early stages of organelle evolution. Here, we expand current understanding of primary plastid endosymbiosis through the discovery and characterization of two novel photosynthetic amoebae, Paulinella marae sp. nov.
Julia Van Etten, Sungpil Han, John A. Burns, Duckhyun Lhee, Andrew C. Willoughby, Timothy G. Stephens, Erin Chille, Robin S. Sleith, Debashish Bhattacharya, Hwan Su Yoon   +9 more
wiley   +1 more source

Maize Genome Assembly with PacBio Reads

BIO-PROTOCOL, 2022
Ying Hu, Marcio Resende Jr.
openaire   +1 more source

Genome‐scale insights into metabolic streamlining and photosynthetic energy balance in the extremophile green alga Picocystis salinarum (Picocystophyceae, Chlorophyta)

Journal of Phycology, EarlyView.
Abstract Picocystis salinarum is an early‐diverging chlorophyte and the sole described member of the Picocystophyceae, frequently dominating hypersaline and alkaline lakes despite extreme physicochemical constraints. To elucidate the genomic foundations of its ecological success, we generated a fully annotated, chromosome‐scale nuclear genome assembly ...
Claude Lemieux, Christian Otis, Monique Turmel   +2 more
wiley   +1 more source

Jointly benchmarking small and structural variant calls with vcfdist

Genome Biology
In this work, we extend vcfdist to be the first variant call benchmarking tool to jointly evaluate phased single-nucleotide polymorphisms (SNPs), small insertions/deletions (INDELs), and structural variants (SVs) for the whole genome. First, we find that
Tim Dunn, Justin M. Zook, James M. Holt, Satish Narayanasamy   +3 more
doaj   +1 more source

PBSIM3 simulated PacBio and ONT R10.4.1 reads for fusion transcripts

<p>Reads simulated for fusion transcripts using PBSIM3 based on PacBio and ONT R10.4.1 profiles.</p ...
Qin, Alvin, Haas, Brian, Popic, Victoria
core   +1 more source