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Haplotype-resolved genome and pan-genome graphs reveal the impacts of structural variation on functional genome and feather colors in chickens. [PDF]
IMetaOmicsGu L +9 more
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The pan-genome of Spodoptera frugiperda provides new insights into genome evolution and horizontal gene transfer. [PDF]
Commun BiolHuang YX +8 more
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Pan-Genome-Wide Association Study Identifies Genetic Factors Associated with the Pathogenicity of Invasive Serotype 19F Streptococcus Pneumoniae. [PDF]
Infect Drug ResistShi X +9 more
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Plant Pan-Genomics Comes of Age
Annual Review of Plant Biology, 2021A pan-genome is the nonredundant collection of genes and/or DNA sequences in a species. Numerous studies have shown that plant pan-genomes are typically much larger than the genome of any individual and that a sizable fraction of the genes in any individual are present in only some genomes.
Li Lei +2 more
exaly +3 more sources
Plant pan-genomics and its applications
Molecular Plant, 2023Plant genomes are so highly diverse that a substantial proportion of genomic sequences are not shared among individuals. The variable DNA sequences, along with the conserved core sequences, compose the more sophisticated pan-genome that represents the collection of all non-redundant DNA in a species.
Junpeng Shi, Zhixi Tian, Jinsheng Lai
exaly +3 more sources
Pan-genomics in the human genome era
Nature Reviews Genetics, 2020 Since the early days of the genome era, the scientific community has relied on a single 'reference' genome for each species, which is used as the basis for a wide range of genetic analyses, including studies of variation within and across species. As sequencing costs have dropped, thousands of new genomes have been sequenced, and scientists have come ...
Rachel M Sherman, Steven L Salzberg
exaly +4 more sources
Current Opinion in Genetics & Development, 2005
A decade after the beginning of the genomic era, the question of how genomics can describe a bacterial species has not been fully addressed. Experimental data have shown that in some species new genes are discovered even after sequencing the genomes of several strains.
Duccio, Medini +4 more
openaire +2 more sources
A decade after the beginning of the genomic era, the question of how genomics can describe a bacterial species has not been fully addressed. Experimental data have shown that in some species new genes are discovered even after sequencing the genomes of several strains.
Duccio, Medini +4 more
openaire +2 more sources
Pan-Genome of Wild and Cultivated Soybeans [PDF]
Cell, 2020 Soybean is one of the most important vegetable oil and protein feed crops. To capture the entire genomic diversity, it is needed to construct a complete high-quality pan-genome from diverse soybean accessions. In this study, we performed individual de novo genome assemblies for 26 representative soybeans that were selected from 2,898 deeply sequenced ...
Huilong Du, 申妍婷, Shulin Liu
exaly +3 more sources