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Characterization of the family-level <i>Borreliaceae</i> pan-genome and development of an episomal typing protocol. [PDF]

open access: yesmBio
Socarras KM   +9 more
europepmc   +1 more source

Pan-Genome of Wild and Cultivated Soybeans [PDF]

open access: yesCell, 2020
Soybean is one of the most important vegetable oil and protein feed crops. To capture the entire genomic diversity, it is needed to construct a complete high-quality pan-genome from diverse soybean accessions. In this study, we performed individual de novo genome assemblies for 26 representative soybeans that were selected from 2,898 deeply sequenced ...
Shulin Liu, Zhi Liu, Miao Shi
exaly   +3 more sources
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The Barley and Wheat Pan-Genomes

2022
To unlock the genetic potential in crops, multi-genome comparisons are an essential tool. Decreasing costs and improved sequencing technologies have democratized plant genome sequencing and led to a vast increase in the amount of available reference sequences on the one hand and enabled the assembly of even the largest and most complex and repetitive ...
Kamal, N.   +7 more
openaire   +3 more sources

Pan-genomics in the human genome era

open access: yesNature Reviews Genetics, 2020
Since the early days of the genome era, the scientific community has relied on a single 'reference' genome for each species, which is used as the basis for a wide range of genetic analyses, including studies of variation within and across species. As sequencing costs have dropped, thousands of new genomes have been sequenced, and scientists have come ...
Rachel M Sherman   +2 more
exaly   +4 more sources

The microbial pan-genome

Current Opinion in Genetics & Development, 2005
A decade after the beginning of the genomic era, the question of how genomics can describe a bacterial species has not been fully addressed. Experimental data have shown that in some species new genes are discovered even after sequencing the genomes of several strains.
Duccio, Medini   +4 more
openaire   +2 more sources

Different evolutionary trends form the twilight zone of the bacterial pan-genome [PDF]

open access: yesMicrobial Genomics, 2021
The pan-genome is defined as the combined set of all genes in the gene pool of a species. Pan-genome analyses have been very useful in helping to understand different evolutionary dynamics of bacterial species: an open pan-genome often indicates a free ...
Gal Horesh   +2 more
exaly   +2 more sources

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