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The Bacterial Pan-Genome and Reverse Vaccinology
2009The whole genome sequence of most human bacterial pathogens is available and the advent of next-generation sequencing technologies will result in a large number of sequenced isolates per pathogenic species. The study of multiple genome sequences of a given bacterium provides insights into its evolution, pathogenic potential and diversity.
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Sequencing the species pan-genome
Nature Reviews Microbiology, 2009This month's Genome Watch discusses the recent advances in sequencing technology that have allowed microbiologists to determine the genome sequences not just of individual species but also of entire genera and have allowed a view of the entire pan-bacterial genome.
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Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations
Cell, 2021Shujun Ou, Min He, Chengzhi Liang
exaly
Toward a high-quality pan-genome landscape of Bacillus subtilis by removal of confounding strains
Briefings in Bioinformatics, 2021Feng Gao, Dan Wang
exaly
Graph-based pan-genomes: increased opportunities in plant genomics.
Journal of Experimental Botany, 2023Ling-Ling Chen +2 more
exaly
The Danish reference pan genome
2014Sequencing of Danish parent-offspring trios to determine genomic variation within the Danish population. First release comprises of ten trios sequenced to 50X using libraries of insert sizes from 180nt to 800nt.
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Critical assessment of pan-genomic analysis of metagenome-assembled genomes.
Briefings in Bioinformatics, 2022Yanbin Yin, Tang Li
exaly