Results 61 to 70 of about 171,414 (293)

A comprehensive evaluation of the potential of three next-generation short-read-based plant pan-genome construction strategies for the identification of novel non-reference sequence

open access: yesFrontiers in Plant Science
Pan-genome studies are important for understanding plant evolution and guiding the breeding of crops by containing all genomic diversity of a certain species.
Meiye Jiang   +11 more
doaj   +1 more source

Comparative analysis reveals the Genomic Islands in Pasteurella multocida population genetics: on Symbiosis and adaptability

open access: yesBMC Genomics, 2019
Background Pasteurella multocida (P. multocida) is a widespread opportunistic pathogen that infects human and various animals. Genomic Islands (GIs) are one of the most important mobile components that quickly help bacteria acquire large fragments of ...
Dekang Zhu   +16 more
doaj   +1 more source

Distributed hybrid-indexing of compressed pan-genomes for scalable and fast sequence alignment.

open access: yesPLoS ONE, 2021
Computational pan-genomics utilizes information from multiple individual genomes in large-scale comparative analysis. Genetic variation between case-controls, ethnic groups, or species can be discovered thoroughly using pan-genomes of such subpopulations.
Altti Ilari Maarala   +4 more
doaj   +1 more source

Inhibition of cyclin‐dependent kinases 12/13 using CT7439 as a treatment for colorectal cancer with CDK12 upregulation

open access: yesMolecular Oncology, EarlyView.
The proposed mechanism of action for the CDK12/13 inhibitor and cyclin K degrader, CT7439. CDK12/13 inhibition interrupts transcription elongation, leading to increased DNA damage that results in cell death. This agent is a potentially novel treatment option for patients with colorectal cancer. Created in BioRender. Cyclin‐dependent kinase (CDK) 12 and
Wylie K. Watlington   +10 more
wiley   +1 more source

The Geobacillus Pan-Genome: Implications for the Evolution of the Genus [PDF]

open access: yesFrontiers in Microbiology, 2016
The genus Geobacillus is comprised of a diverse group of spore-forming Gram-positive thermophilic bacterial species and is well known for both its ecological diversity and as a source of novel thermostable enzymes. Although the mechanisms underlying the thermophilicity of the organism and the thermostability of its macromolecules are reasonably well ...
Bezuidt, Keoagile Ignatius Oliver   +6 more
openaire   +4 more sources

The cyanobacterial core and pan-genome.

open access: yes, 2018
(A) The distribution of CLOGs as a function of the number of assigned strains. (B) The size of the pan-genome estimated for an increasing number of strains.
Ralf Steuer (56833)   +2 more
core   +1 more source

ZW4864‐mediated inhibition of the β‐catenin/BCL9/BCL9L complex reveals therapeutic potential in bladder cancer

open access: yesMolecular Oncology, EarlyView.
BCL9 and BCL9L drive bladder cancer progression by enhancing β‐catenin signaling, promoting proliferation, migration, invasion, and organoid growth. Genetic depletion of BCL9(L) suppresses malignant phenotypes, while pharmacological disruption of the β‐catenin/BCL9(L) complex with ZW4864 inhibits canonical Wnt signaling and tumor‐associated cellular ...
Roland Kotolloshi   +11 more
wiley   +1 more source

Pan-genomics of polyploid crops: from complexity to breeding

open access: yesFrontiers in Plant Science
Improving crop productivity is essential to ensure global food security in the context of climate change and an increasing global population. Over the past few decades, sequencing has significantly expanded our ability to explore complex genomes. However,
Yogesh Dashrath Naik   +5 more
doaj   +1 more source

Pan-genome (zipped directory)

open access: yes, 2018
Klebsiella pneumoniae pan-genome analysis files and Python script.These data are described in Wyres et al "Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae."
KELLY WYRES (1122371)
core   +1 more source

Pan-genome mapping thresholds.

open access: yes, 2023
a) Determining the number of additional genes identified at each CV threshold. The dashed red line indicates the chosen threshold (≤ 1.5) for the analysis. b) Distribution of mean gene coverages for the mapping of the ancient B.
Valentina Giuffra (4735104)   +13 more
core   +1 more source

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