Results 151 to 160 of about 2,036 (163)

The geospatial phylodynamics of SARS-CoV-2 in Nepal and clinical phenotype of long COVID during the Delta-Omicron waves

Wirth W, Thomson TN, Manandhar P, Shrestha S, Napit R, Dixit SM, Shrestha G, Lane CR, Gyanwali P, Pant S, Rajbhandari SK, Bhandari P, Chalise BS, Das CL, Yadav PK, Thapa P, Mishra P, Basnyat B, Karkey A, Maharjan N, Kovalenko G, Goodfellow I, Baker S, Ioannidis LJ, Seemann T, Dunstan S, Pandey D, Parajuli R, Koirala RP, Dhital R, Caws M.   +30 more
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Bayesian phylodynamics of early vertebrate development in BEAST 2

Zwaans A, Seidel S, Manceau M, Stadler T.   +3 more
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Phylodynamics for cell biologists

Science, 2021
Ancestry and evolution in cell biology Advances in experimental approaches for single-cell analysis allow in situ sequencing, genomic barcoding, and mapping of cell lineages within tissues and organisms. Large amounts of data have thus accumulated and present an analytical challenge.
T. Stadler, O. G. Pybus, M. P. H. Stumpf
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Development of Phylodynamic Methods for Bacterial Pathogens

Trends in Microbiology, 2021
Phylodynamic methods have been essential to understand the interplay between the evolution and epidemiology of infectious diseases. To date, the field has centered on viruses. Bacterial pathogens are seldom analyzed under such phylodynamic frameworks, due to their complex genome evolution and, until recently, a paucity of whole-genome sequence data ...
Danielle J. Ingle, Benjamin P. Howden, Sebastian Duchene   +2 more
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Characterizing enterovirus C96 genome and phylodynamics analysis

Journal of Medical Virology, 2023
AbstractEnterovirus C96 (EV‐C96) is a recently discovered serotype belonging to enterovirus C species. It had been isolated from patients with acute flaccid paralysis, hand, foot, and mouth disease, diarrhea, healthy people, or environmental specimens. Despite increasing reports of the virus, the small number of full‐length genomes available for EV‐C96
Tingting Yang, Qiang Sun, Dongmei Yan, Shuangli Zhu, Tianjiao Ji, Jinbo Xiao, Huanhuan Lu, Ying Liu, Yun He, Wenhui Wang, Ruyi Cong, Xiaoyi Wang, Qian Yang, Weijia Xing, Yong Zhang   +14 more
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Molecular phylodynamics of infectious bursal disease viruses

Virus Genes, 2022
The present study was conducted to study the molecular phylodynamics of the Indian field IBDVs. A total of 13 organized commercial poultry farms and 29 village poultry flocks were recruited in the study. The broiler flocks showed 15.25-60.18% mortality, followed by 12.4% in improved native poultry varieties and 5% in indigenous birds.
Aditya A. Agnihotri, Sudhakar P. Awandkar, Mahesh B. Kulkarni, Sambhaji G. Chavhan, Ram C. Kulkarni, Vishranti G. Chavan   +5 more
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Phylodynamics of Human Coxsackievirus B5

Future Virology, 2014
ABSTRACT:  Aim: Coxsackievirus B5 is recognized as an important pathogen in aseptic meningitis and hand, foot and mouth disease of children. A new distinctive sublineage of Coxsackievirus B5 associated with outbreak of neurological hand, foot and mouth disease in China was recently reported. Materials & methods: We employed a molecular evolution method
Congjun Hao, Chunyan Hao, Wenbin Li, Xianjun Liu, Jizheng Luo   +4 more
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Maximum Likelihood Phylodynamic Analysis

2018
Die Anzahl der verfügbaren Genomsequenzen für verschiedene Pathogene hat in den letzten Jahren ausserordentlich zugenommen. Bestehende tradi- tionelle Methoden für die phylodynamische Analyse sind nicht effizient für eine große Anzahl von Sequenzen. Um mit den heute verfügbaren Daten- sätzen umzugehen, sind effiziente Heuristiken notwendig.
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Phylodynamics of Influenza A Viruses

2015
Human populations are constantly exposed to emerging pathogens such as influenza A viruses that result from cross-species transmissions. Generally these sporadic events are evolutionary dead-ends, but occasionally, viruses establish themselves in a new host that offers a novel genomic context to which the virus must adjust to avoid attenuation. However,
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