Results 131 to 140 of about 2,963 (216)

Phylodynamic Structure in the Botswana HIV Epidemic

Abstract Background Studying viral sequences can provide insights into the structure of host contact networks through which the virus is transmitted. Uncovering the population structure of the HIV-1 epidemic in Botswana will help optimise public health interventions and may identify hidden sub-epidemics. We sought to determine the phylodynamic
Kenanao Kotokwe, Fabrícia F. Nascimento, Sikhulile Moyo, Simani Gaseitsiwe, Molly Pretorius Holme, Joseph Makhema, Max Essex, Vlad Novitsky, Erik Volz, Manon Ragonnet-Cronin, PANGEA Consortium   +10 more
openaire   +2 more sources

Data from: The contrasting phylodynamics of human influenza B viruses

, 2015
A complex interplay of viral, host and ecological factors shape the spatio-temporal incidence and evolution of human influenza viruses. Although considerable attention has been paid to influenza A viruses, a lack of equivalent data means that an ...
Zhou, Bin, Lee, Raphael T. C., Stadler, Tanja, Bošková, Veronika, Spirason, Natalie, Deng, Yi-Mo, Wentworth, David, Huang, Q. Sue, Lee, Raphael TC, Costa, Anna-Maria, Halpin, Rebecca, Smith, Gavin JD, Maurer-Stroh, Sebastian, Rawlinson, William, Gunalan, Vithiagaran, Hurt, Aeron C., Kühnert, Denise K., Vijaykrishna, Dhanasekaran, Jennings, Lance C., Fedorova, Nadia B., Holmes, Edward C., Dwyer, Dominic E., Sullivan, Sheena G., Joseph, Udayan, Fourment, Mathieu, Su, Yvonne C. F., Lin, Xudong, Smith, Gavin J. D., Barr, Ian G., Stockwell, Tim   +29 more
core   +1 more source

Phylodynamics of parapoxvirus genus in Mexico (2007–2011)

, 2018
© 2018 In this study we report for the first time the phylodynamics of the parapoxvirus (PPV) genus in Mexico. Based on the analysis by PCR of 124 epithelial samples collected between 2007 and 2011 from naturally infected goats, sheep and cows in Mexico,
Gladue, DP, Velazquez-Salinas, L, Carrillo, C, Bracht, AJ, Ramirez-Medina, E, Hole, K, Brito, BP   +6 more
core   +1 more source

Phylodynamics of H5N1 avian influenza virus in Indonesia

Molecular Ecology, 2012
AbstractUnderstanding how pathogens invade and become established in novel host populations is central to the ecology and evolution of infectious disease. Influenza viruses provide unique opportunities to study these processes in nature because of their rapid evolution, extensive surveillance, large data sets and propensity to jump species boundaries ...
Leung, FCC, Holmes, EC, Lam, TTY, Hon, CC, Lemey, P, Pybus, OG, Shi, M, Li, J, Jiang, J, Tun, HM   +9 more
openaire   +5 more sources

Single-cell phylodynamic inference of stem cell differentiation and tumor evolution, Wang et al.

Data and code for single-cell phylodynamics inference of stem cell differentiation and tumor ...
Wang, Kun
core   +1 more source

ciarajudge/EpiFusion

Repository for EpiFusion, an infectious disease modelling framework built on the principles of phylodynamics and ...
Judge, Ciara
core   +2 more sources

Investigation of bovine leukemia virus transmission pathways within dairy herds through analysis of genomic and epidemiological data

Journal of Dairy Science
: Bovine leukemia virus (BLV) is a highly prevalent retrovirus in US dairy cattle herds and has negatively affected dairy herds by reducing milk production, increasing culling rates, and contributing to economic losses. The objective of this study was to
B.M. Nyokabi, A. Kumari, J. Nirmala, V.K. Singh, S.M. Goyal, S.K. Mor, N.M. Sobhy, D.C. Schroeder, S.J. Wells   +8 more
doaj   +1 more source

Case-control and genomic epidemiology characterization of SARS-CoV-2 breakthrough infections during the Delta-to-Omicron transition

mBio
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) vaccines reduced severe coronavirus disease 2019, but variants like Delta and Omicron caused widespread breakthrough infections (BIs). Mexico, offering diverse vaccines, and its Yucatán region,
Erin Yuan, Chelsea L. Hansen, Sana Tamim, Samia Kanwar, David J. Spiro, Refugio Gonzalez-Losa, Laura Conde-Ferraez, Pilar Granja-Pérez, Salha Villanueva-Jorge, Irma López-Martínez, Gisela Barrea-Badillo, André Corvelo, Samantha Fennessey, Michael C. Zody, Guadalupe Ayora-Talavera, Nidia S. Trovao   +15 more
doaj   +1 more source

Quantifying the epidemic spread of Ebola virus (EBOV) in Sierra Leone using phylodynamics

, 2014
International audienceMeasuring epidemic parameters early in an outbreak is essential to inform control efforts. Using the viral genome sequence and collection date from 74 infections in the 2014 Ebola virus outbreak in Sierra Leone, we estimate key ...
Alizon, Samuel, Murall, Carmen Lia, Lion, Sébastien, Abbate, Jessica Lee   +3 more
core   +1 more source

The Global Evolutionary History of Orf Virus in Sheep and Goats Revealed by Whole Genomes Data

Viruses
Orf virus (ORFV) belongs to the genus Parapoxvirus (Poxviridae family). It is the causative agent of contagious ecthyma (CE) that is an economically detrimental disease affecting small ruminants globally. Contagious ecthyma outbreaks are usually reported
Elisabetta Coradduzza, Fabio Scarpa, Angela Maria Rocchigiani, Carla Cacciotto, Giada Lostia, Mariangela Stefania Fiori, Yoel Rodriguez Valera, Alessandra Mistral De Pascali, Martina Brandolini, Ilenia Azzena, Chiara Locci, Marco Casu, Roberto Bechere, Davide Pintus, Ciriaco Ligios, Alessandra Scagliarini, Daria Sanna, Giantonella Puggioni   +17 more
doaj   +1 more source