Results 151 to 160 of about 2,107 (180)

Utility of various genome lengths in diversity and evolution analyses of Hepatitis E virus. [PDF]

Virus Res
Hakze-van der Honing RW, Franz E, van der Poel WHM, Coipan CE.   +3 more
europepmc   +1 more source

Rapid expansion of genotype D1.1 A(H5N1) influenza viruses in wild birds across North America during the 2024 migratory season. [PDF]

Nat Med
Harrington WN, Signore A, Kercher L, Giacinti JA, Kandeil A, Ahlstrom CA, Bevins S, Crossley B, Eure K, Fabrizio TP, Jeevan T, Lenoch J, Nolting JM, Rejmanek D, Stallknecht D, Bollinger T, Buck EJ, Carter D, Cohen BS, Dilione KE, Feddersen JC, Franks J, Goldsmith D, Highway CJ, Himsworth C, Holmes LP, Jardine C, Jahid MJ, Link P, Miller L, Nemeth NM, Owsiany M, Pybus M, Scott LC, Sharp C, Smith L, Steelman NJ, Stevens B, Berhane Y, Torchetti M, Ramey AM, Poulson R, Webby RJ.   +42 more
europepmc   +1 more source

Case-control and genomic epidemiology characterization of SARS-CoV-2 breakthrough infections during the Delta-to-Omicron transition. [PDF]

mBio
Yuan E, Hansen CL, Tamim S, Kanwar S, Spiro DJ, Gonzalez-Losa R, Conde-Ferraez L, Granja-Pérez P, Villanueva-Jorge S, López-Martínez I, Barrea-Badillo G, Corvelo A, Fennessey S, Zody MC, Ayora-Talavera G, Trovao NS.   +15 more
europepmc   +1 more source

Update on the Phylodynamics of SADS-CoV [PDF]

Life, 2021
Coronaviruses are known to be harmful and heterogeneous viruses, able to infect a large number of hosts. Among them, SADS-CoV (Swine Acute Diarrhea Syndrome Coronavirus), also known as PEAV (Porcine Enteric Alphacoronavirus), or SeA-CoV (Swine Enteric Alphacoronavirus), is the most recent Alphacoronavirus discovered, and caused several outbreaks ...
Pier Luigi Fiori, Elisabetta Coradduzza, Daria Sanna   +2 more
exaly   +9 more sources

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Phylodynamics for cell biologists

Science, 2021
Ancestry and evolution in cell biology Advances in experimental approaches for single-cell analysis allow in situ sequencing, genomic barcoding, and mapping of cell lineages within tissues and organisms. Large amounts of data have thus accumulated and present an analytical challenge.
T. Stadler, O. G. Pybus, M. P. H. Stumpf
openaire   +2 more sources

Development of Phylodynamic Methods for Bacterial Pathogens

Trends in Microbiology, 2021
Phylodynamic methods have been essential to understand the interplay between the evolution and epidemiology of infectious diseases. To date, the field has centered on viruses. Bacterial pathogens are seldom analyzed under such phylodynamic frameworks, due to their complex genome evolution and, until recently, a paucity of whole-genome sequence data ...
Danielle J. Ingle, Benjamin P. Howden, Sebastian Duchene   +2 more
openaire   +2 more sources

Modelling tree shape and structure in viral phylodynamics [PDF]

Philosophical Transactions of the Royal Society B: Biological Sciences, 2013
Abstract Epidemiological models have highlighted the importance of population structure in the transmission dynamics of infectious diseases. Using HIV-1 as an example of a model evolutionary system, we consider how population structure affects the shape and the structure of a viral phylogeny in the absence of strong selection at the ...
Erik Volz, Simon Frost
exaly   +3 more sources

Maximum Likelihood Phylodynamic Analysis

2018
Die Anzahl der verfügbaren Genomsequenzen für verschiedene Pathogene hat in den letzten Jahren ausserordentlich zugenommen. Bestehende tradi- tionelle Methoden für die phylodynamische Analyse sind nicht effizient für eine große Anzahl von Sequenzen. Um mit den heute verfügbaren Daten- sätzen umzugehen, sind effiziente Heuristiken notwendig.
openaire   +3 more sources

Phylodynamics of Human Coxsackievirus B5

Future Virology, 2014
ABSTRACT:  Aim: Coxsackievirus B5 is recognized as an important pathogen in aseptic meningitis and hand, foot and mouth disease of children. A new distinctive sublineage of Coxsackievirus B5 associated with outbreak of neurological hand, foot and mouth disease in China was recently reported. Materials & methods: We employed a molecular evolution method
Congjun Hao, Chunyan Hao, Wenbin Li, Xianjun Liu, Jizheng Luo   +4 more
openaire   +1 more source

Phylodynamics of Influenza A Viruses

2015
Human populations are constantly exposed to emerging pathogens such as influenza A viruses that result from cross-species transmissions. Generally these sporadic events are evolutionary dead-ends, but occasionally, viruses establish themselves in a new host that offers a novel genomic context to which the virus must adjust to avoid attenuation. However,
openaire   +2 more sources