Results 141 to 150 of about 2,963 (216)

Bayesian phylodynamic inference of population dynamics with dormancy

Proceedings of the National Academy of Sciences
ABSTRACT Many organisms employ reversible dormancy, or seedbank , in response to environmental fluctuations. This life-history strategy alters fundamental eco-evolutionary forces, leading to distinct patterns of genetic diversity.
Lorenzo Cappello, Wai Tung ‘Jack’ Lo, Joy Z. Zhang, Peiyu Xu, Daniel Barrow, Ishani Chopra, Andrew G. Clark, Martin T. Wells, Jaehee Kim   +8 more
openaire   +4 more sources

Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States

, 2017
We demonstrate that integration of laboratory, phylogenetic, and epidemiologic data sources allow detailed reconstruction of an outbreak. High-resolution reconstruction of outbreak phylodynamics allows prevention and intervention strategies to be ...
Pamela Pontones, Anupama Shankar, Walid Heneine, Philip J Peters, Alexandra M Oster, Paula Peyrani, John T Brooks, Romeo R Galang, Ron M Kagan, Jessica Gentry, Ellsworth M Campbell, Debra Hanson, Wei Luo, Silvina Masciotra, Joan Duwve, S Michele Owen, William M Switzer, Jeannette M Whitcomb, Hongwei Jia, Sara J Blosser, Erika Chapman, Jeremy C Roseberry, Michael W Spiller   +22 more
core   +1 more source

Phylogenetic and phylodynamic approaches to understanding the evolution of non-small cell lung cancer using single-cell sequencing. [PDF]

Oncogene
Li T, Li X, Zou Y, Wong TKF, Campa MJ, Gottlin EB, Patz EF, Rodrigo A.   +7 more
europepmc   +1 more source

Equine influenza virus at 70: What horses taught us about flu. [PDF]

PLoS Pathog
Mojsiejczuk L, Chambers TM, Murcia PR.
europepmc   +1 more source

Molecular characteristics, phylodynamics, and evolutionary changes of avian infectious bronchitis virus detected from chickens in Yunnan Province, 2021-2024. [PDF]

Poult Sci
Mu W, Liu H, Zou X, Wang R, Wang J, Li X, He F, Angkititrakul S, Xiang B, Yang L.   +9 more
europepmc   +1 more source

Viral introductions and return to baseline sexual behaviors maintain low-level mpox incidence in Los Angeles. [PDF]

Nat Commun
Paredes MI, Liang C, Suen SC, Holloway IW, Garrigues JM, Green NM, Bedford T, Müller NF, Osmundson J.   +8 more
europepmc   +1 more source

treestructure: an R package to detect population structure in phylogenetic trees. [PDF]

Bioinformatics
Nascimento FF, Franceschi VB, Volz EM.
europepmc   +1 more source

Navigating the mysterious space of evolutionary histories. [PDF]

Proc Natl Acad Sci U S A
Drummond AJ, Popinga A.
europepmc   +1 more source

Fast hospital discharge rates blur within-hospital 'transmission footprint' in bacterial genomes, as showcased with Staphylococcus aureus. [PDF]

PLoS Comput Biol
Översti S, Boumasmoud M, Günthard HF, Sax H, Zinkernagel AS, Kouyos RD, Kühnert D.   +6 more
europepmc   +1 more source

Biological causes and impacts of rugged tree landscapes in phylodynamic inference. [PDF]

Proc Natl Acad Sci U S A
Gao J, Brusselmans M, Carvalho LM, Suchard MA, Baele G, Matsen FA.   +5 more
europepmc   +1 more source