Results 141 to 150 of about 4,475 (152)

Genomic Modeling of an Outbreak of Multidrug-Resistant Shigella sonnei, California, USA, 2023-2024. [PDF]

Emerg Infect Dis
Lloyd T, Khan SM, Heaton D, Shemsu M, Varghese V, Graham J, Gregory M, Dorfman P, Talton M, DeVol J, Müller NF, Trivedi KK.   +11 more
europepmc   +1 more source

Tn<i>4401</i>/Tn<i>7247</i> transposon-derived structures driving the cross-transmission of <i>bla</i> _KPC among plasmids and chromosomes in clinical carbapenem-resistant <i>Pseudomonas aeruginosa</i>. [PDF]

Curr Res Microb Sci
Chen S, Jia X, Gao H, Zhu Y, Li Z, Jia P, Liu X, Yu W, Chu X, Zhang Q, Yang Q.   +10 more
europepmc   +1 more source

Phylodynamics beyond neutrality: the impact of incomplete purifying selection on viral phylogenies and inference. [PDF]

Philos Trans R Soc Lond B Biol Sci
Koelle K, Rasmussen DA.
europepmc   +1 more source

A Bayesian phylodynamic inference framework for single-cell CRISPR/Cas9 lineage tracing barcode data with dependent target sites. [PDF]

Philos Trans R Soc Lond B Biol Sci
Zwaans A, Seidel S, Manceau M, Stadler T.   +3 more
europepmc   +1 more source

Emergence and evolution of epizootic hemorrhagic disease virus in the Mediterranean region: spatio-temporal dynamics and epidemiological insights. [PDF]

Front Vet Sci
Arbi M, Harigua-Souiai E, Hanachi M, Larbi I, Chaouch M, Rjaibi D, Diouani MF, Benkahla A, Souiai O.   +8 more
europepmc   +1 more source

MASCOT-Skyline integrates population and migration dynamics to enhance phylogeographic reconstructions. [PDF]

PLoS Comput Biol
Müller NF, Bouckaert RR, Wu CH, Bedford T.   +3 more
europepmc   +1 more source

Estimating epidemic dynamics with genomic and time series data. [PDF]

J R Soc Interface
Zarebski AE, Zwaans A, Gutierrez B, du Plessis L, Pybus OG.   +4 more
europepmc   +1 more source

Deep Learning and Likelihood Approaches for Viral Phylogeography Converge on the Same Answers Whether the Inference Model Is Right or Wrong. [PDF]

Syst Biol
Thompson A, Liebeskind BJ, Scully EJ, Landis MJ.   +3 more
europepmc   +1 more source

Black swans as sentinel species for the emergence of clade 2.3.4.4b highly pathogenic avian influenza (H5N1) in Shanghai, China, 2024. [PDF]

Virol Sin
Xu Y, Wu S, Ji L, Hu J, Wang J, Li K, Yuan Y, Li G, Zhu G, Hua P, Miao Q, He H, He G.   +12 more
europepmc   +1 more source

The geospatial phylodynamics of SARS-CoV-2 in Nepal and clinical phenotype of long COVID during the Delta-Omicron waves

Wirth W, Thomson TN, Manandhar P, Shrestha S, Napit R, Dixit SM, Shrestha G, Lane CR, Gyanwali P, Pant S, Rajbhandari SK, Bhandari P, Chalise BS, Das CL, Yadav PK, Thapa P, Mishra P, Basnyat B, Karkey A, Maharjan N, Kovalenko G, Goodfellow I, Baker S, Ioannidis LJ, Seemann T, Dunstan S, Pandey D, Parajuli R, Koirala RP, Dhital R, Caws M.   +30 more
europepmc   +1 more source