Results 21 to 30 of about 850,464 (362)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
bioRxiv, 2019 IQ-TREE (http://www.iqtree.org) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models ...
B. Minh +6 more
semanticscholar +1 more source
A new species of Charinus Simon 1892 from Brazil, with notes on behavior (Amblypygi, Charinidae)
ZooKeys, 2016 A new species of Charinus is described and illustrated from the Brazilian Atlantic Forest. Charinus ruschii sp. n. is found in Santa Lúcia reserve, Espírito Santo state, and is sympatric with C. brasilianus and C. montanus.
Gustavo Miranda +4 more
doaj +3 more sources
Frontiers in Genetics, 2021 Here we report on comprehensive chloroplast (cp) genome analysis of 16 pomegranate (Punica granatum L.) genotypes representing commercial cultivars, ornamental and wild types, through large-scale sequencing and assembling using next-generation sequencing
Nripendra Vikram Singh +8 more
doaj +1 more source
OrthoFinder: phylogenetic orthology inference for comparative genomics
Genome Biology, 2019 Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative
David M. Emms, S. Kelly
semanticscholar +1 more source
Identification of a Novel Gammaherpesvirus in Canada lynx (Lynx canadensis)
Viruses, 2019 Gammaherpesviruses (GHVs) infect many animal species and are associated with lymphoproliferative disorders in some. Previously, we identified several novel GHVs in North American felids; however, a GHV had never been identified in Canada lynx (Lynx ...
Liam D. Hendrikse +9 more
doaj +1 more source
Bulletin of the Iraq Natural History Museum, 2022 Freshwater mussels are a guild of stationary, suspended-feeding species; they perform significant ecological functions like nitrogen cycling, bioturbation that gives oxygen and habitat that other creatures need to survive, and ...
Shwan Khursheed Bashê
doaj +1 more source
ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates
Nature Methods, 2017 Model-based molecular phylogenetics plays an important role in comparisons of genomic data, and model selection is a key step in all such analyses. We present ModelFinder, a fast model-selection method that greatly improves the accuracy of phylogenetic ...
S. Kalyaanamoorthy +4 more
semanticscholar +1 more source
Phylogenetic comparative assembly [PDF]
Algorithms for Molecular Biology, 2009 Recent high throughput sequencing technologies are capable of generating a huge amount of data for bacterial genome sequencing projects. Although current sequence assemblers successfully merge the overlapping reads, often several contigs remain which cannot be assembled any further.
Husemann, Peter, Stoye, Jens
openaire +7 more sources
Molecular survey for foot-and-mouth disease virus in livestock in Tanzania, 2008–2013
Onderstepoort Journal of Veterinary Research, 2014 Phylogeography data are of paramount importance in studying the molecular epidemiology dynamics of foot-and-mouth disease virus (FMDV). In this study, epithelial samples and oesophageal-pharyngeal fluids were collected from 361 convalescent animals ...
Raphael S. Sallu +10 more
doaj +1 more source
Isolation and typing of Streptococcus mutans and Streptococcus sobrinus from caries-active subjects
Contemporary Clinical Dentistry, 2017 Background: Streptococcus mutans and Streptococcus sobrinus are main etiological agents of dental caries. Aim: The aim of the study was to isolate, identify, characterize, and determine the minimum inhibitory concentration (MIC) of S.
Hamzah Abdulrahman Salman +3 more
doaj +1 more source