Results 21 to 30 of about 1,477,998 (362)
Microorganisms, 2020 Biofilms are complex structures that are crucial during host–bacteria interaction and colonization. Bacteria within biofilms are surrounded by an extracellular matrix (ECM) typically composed of proteins, polysaccharides, lipids, and DNA.
Esther Blanco-Romero +4 more
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Animals, 2022 One of the key targets of community ecology and biogeography concerns revealing the variability and underlying drivers of biodiversity. Most current studies understand biodiversity based on taxonomic information alone, but few studies have shown the ...
Naicheng Wu +5 more
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Life, 2022 ZIP4 (zinc transporter 4) plays important roles in transporting Cu2+ ions in plants, which may contribute to the maintenance of plant metal homeostasis in growth, plant development and normal physiological metabolism.
Yisu Shi +8 more
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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
bioRxiv, 2019 IQ-TREE (http://www.iqtree.org) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models ...
B. Minh +6 more
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A new species of Charinus Simon 1892 from Brazil, with notes on behavior (Amblypygi, Charinidae)
ZooKeys, 2016 A new species of Charinus is described and illustrated from the Brazilian Atlantic Forest. Charinus ruschii sp. n. is found in Santa Lúcia reserve, Espírito Santo state, and is sympatric with C. brasilianus and C. montanus.
Gustavo Miranda +4 more
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OrthoFinder: phylogenetic orthology inference for comparative genomics
Genome Biology, 2019 Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative
David M. Emms, S. Kelly
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Tangent Phylogenetic PCA [PDF]
, 2023 Phylogenetic PCA (p-PCA) is a version of PCA for observations that are leaf nodes of a phylogenetic tree. P-PCA accounts for the fact that such observations are not independent, due to shared evolutionary history. The method works on Euclidean data, but in evolutionary biology there is a need for applying it to data on manifolds, particularly shapes ...
Akhøj, Morten +2 more
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ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates
Nature Methods, 2017 Model-based molecular phylogenetics plays an important role in comparisons of genomic data, and model selection is a key step in all such analyses. We present ModelFinder, a fast model-selection method that greatly improves the accuracy of phylogenetic ...
S. Kalyaanamoorthy +4 more
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Phylogenetic comparative assembly [PDF]
Algorithms for Molecular Biology, 2009 Recent high throughput sequencing technologies are capable of generating a huge amount of data for bacterial genome sequencing projects. Although current sequence assemblers successfully merge the overlapping reads, often several contigs remain which cannot be assembled any further.
Husemann, Peter, Stoye, Jens
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Vietnam Journal of Science, Technology and Engineering, 2018 Huyen-sam (Vietnamese name) which belongs to Scrophularia L. genus is a valuable herb. This medicinal plant is classified as Scrophularia ningpoensis Hemsl.
Manh Minh Bui +5 more
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