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Phylogenetic comparative assembly [PDF]
Algorithms for Molecular Biology, 2009 Recent high throughput sequencing technologies are capable of generating a huge amount of data for bacterial genome sequencing projects. Although current sequence assemblers successfully merge the overlapping reads, often several contigs remain which cannot be assembled any further.
Husemann, Peter, Stoye, Jens
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Phylogenetic diversity and biodiversity indices on phylogenetic networks [PDF]
Mathematical Biosciences, 2018 In biodiversity conservation it is often necessary to prioritize the species to conserve. Existing approaches to prioritization, e.g. the Fair Proportion Index and the Shapley Value, are based on phylogenetic trees and rank species according to their contribution to overall phylogenetic diversity.
Kristina Wicke, Mareike Fischer
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Tangent Phylogenetic PCA [PDF]
, 2023 Phylogenetic PCA (p-PCA) is a version of PCA for observations that are leaf nodes of a phylogenetic tree. P-PCA accounts for the fact that such observations are not independent, due to shared evolutionary history. The method works on Euclidean data, but in evolutionary biology there is a need for applying it to data on manifolds, particularly shapes ...
Akhøj, Morten +2 more
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Vietnam Journal of Science, Technology and Engineering, 2018 Huyen-sam (Vietnamese name) which belongs to Scrophularia L. genus is a valuable herb. This medicinal plant is classified as Scrophularia ningpoensis Hemsl.
Manh Minh Bui +5 more
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Mycobiology, 2021 Two new species of Fulvifomes are described from specimens collected in rainforests of Nonggang Nature Reserve of southern China, based on morphological characteristics and molecular phylogenetic analysis of the internal transcribed spacer (ITS) and ...
Hai-Fu Zheng +4 more
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Human Parechovirus Infection, Denmark
Emerging Infectious Diseases, 2014 Human parechoviruses (HPeVs) often cause severe illness among young children. National surveillance with routine testing of all cerebrospinal fluid, fecal, and tissue samples was conducted during January 2009–December 2012 in all counties in Denmark (6 ...
Thea K. Fischer +3 more
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Genetic variation and phylogenetic analysis of Indonesian indigenous catfish based on mitochondrial cytochrome oxidase subunit III gene [PDF]
Veterinary World, 2019 Aim: This study aimed to analyze the genetic variation and phylogenetic reconstruction of Indonesian indigenous catfish using mitochondrial cytochrome oxidase subunit III sequences.
Rini Widayanti +3 more
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Phylogenetic Factor Analysis [PDF]
Systematic Biology, 2017 51 pages (42 main, 9 supplemental), 9 figures (5 main, 4 supplemental), 4 tables (2 main, 2 supplemental), submitted to Systematic ...
Tolkoff, Max R. +4 more
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Frontiers in Microbiology, 2023 O26 is the commonest non-O157 Shiga toxin (stx)-producing Escherichia coli serogroup reported in human infections worldwide. Ruminants, particularly cattle, are the primary reservoir source for human infection.
Deborah V. Hoyle +12 more
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New Phytologist, 2021 SummaryPolyploidy is a dominant feature of extant plant diversity. However, major research questions, including whether polyploidy is important to long‐term evolution or is just ‘evolutionary noise’, remain unresolved due to difficulties associated with the generation and analysis of data from polyploid lineages.
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