Results 51 to 60 of about 1,477,998 (362)

Plant Molecular Biology Databases

Highlights in BioScience, 2019
Many plant biological database comprises data from study fields including metabolomics, proteomics, genomics, microarray gene expression, and phylogenetic. Information in biological databases involves the role of genes, composition, chromosomal location,
Zubair Awan, Aqib Ali, Abbas Iqbal
doaj   +1 more source

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Systematic Biology, 2012
Since its introduction in 2001, MrBayes has grown in popularity as a software package for Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. With this note, we announce the release of version 3.2, a major upgrade to the latest
F. Ronquist, M. Teslenko, Paul van der Mark, Daniel L. Ayres, A. Darling, S. Höhna, B. Larget, Liang Liu, M. Suchard, J. Huelsenbeck   +9 more
semanticscholar   +1 more source

Systematic identification of gene families for use as markers for phylogenetic and phylogeny- driven ecological studies of bacteria and archaea and their major subgroups [PDF]

, 2013
With the astonishing rate that the genomic and metagenomic sequence data sets are accumulating, there are many reasons to constrain the data analyses.
Eisen, Jonathan A., Jospin, Guillaume, Wu, Dongying   +2 more
core   +4 more sources

Improved Understanding of the Macrofungal Diversity of Mongolia: Species Richness, Conservation Status, and An Annotated Checklist

Mycobiology
In this study, we updated and revised the checklist of macrofungi, along with the distribution of phytogeographical regions and the regional conservation status in Mongolia.
Nyamsuren Kherlenchimeg, Ganbaatar Burenbaatar, Shukherdorj Baasanmunkh, Zagarjav Tsegmed, Magsar Urgamal, Tolgor Bau, Sang-Kuk Han, Seung-Yoon Oh, Hyeok Jae Choi   +8 more
doaj   +1 more source

The agreement distance of unrooted phylogenetic networks

, 2020
A rearrangement operation makes a small graph-theoretical change to a phylogenetic network to transform it into another one. For unrooted phylogenetic trees and networks, popular rearrangement operations are tree bisection and reconnection (TBR) and ...
Klawitter, Jonathan
core   +1 more source

jsPhyloSVG: A Javascript Library for Visualizing Interactive and Vector-Based Phylogenetic Trees on the Web [PDF]

, 2010
BackgroundMany software packages have been developed to address the need for generating phylogenetic trees intended for print. With an increased use of the web to disseminate scientific literature, there is a need for phylogenetic trees to be viewable ...
Ouverney, Cleber C., Smits, Samuel A.
core   +4 more sources

Molecular Identification and Phylogenetic Trees Reconstruction of Blue Swimming Crabs (Decapoda: Portunidae) from Pangpang Bay, Banyuwangi

Ilmu Kelautan, 2022
Crabs are a group of Decapoda (Portunidae) that act as keystone species from Pangpang Bay as the marine benthic organism. Besides having an ecological function, crab also provides essential components for human health.
Sapto Andriyono, Reza Istiqomatul Hidayah, Laksmi Sulmartiwi, Andi Aliah Hidayani, Md. Jobaidul Alam   +4 more
doaj   +1 more source

The Fair Proportion is a Shapley Value on phylogenetic networks too

, 2018
The Fair Proportion of a species in a phylogenetic tree is a very simple measure that has been used to assess its value relative to the overall phylogenetic diversity represented by the tree.
Coronado, Tomás M., Riera, Gabriel, Rosselló, Francesc   +2 more
core   +1 more source

Cophenetic metrics for phylogenetic trees, after Sokal and Rohlf [PDF]

, 2013
Phylogenetic tree comparison metrics are an important tool in the study of evolution, and hence the definition of such metrics is an interesting problem in phylogenetics.
Cardona, Gabriel, Mir, Arnau, Rossello, Francesc, Rotger, Lucia, Sanchez, David   +4 more
core   +2 more sources

Genotypic diversity and molecular characterization of DENV-2 in a Peruvian endemic region from 2016 to 2022: displacement of American/Asian genotype

Frontiers in Microbiology
BackgroundDengue is the most prevalent acute febrile disease with serious clinical consequences in the tropical and subtropical regions of Asia and America.
Yordi Tarazona-Castro, Yordi Tarazona-Castro, Miguel Angel Aguilar-Luis, Wilmer Silva-Caso, Hugh Watson, Victor Zavaleta-Gavidia, Victor Zavaleta-Gavidia, Ronald Aquino-Ortega, Luis J. Del Valle, Luis J. Del Valle, Jorge Bazan-Mayra, Jorge Bazan-Mayra, Egma Mayta Huatuco, Juana del Valle-Mendoza   +13 more
doaj   +1 more source