Results 21 to 30 of about 2,090,215 (317)
Algorithms for Molecular Biology, 2023 Objective In mathematical phylogenetics, a labeled rooted binary tree topology can possess any of a number of labeled histories, each of which represents a possible temporal ordering of its coalescences.
Shaili Mathur, Noah A. Rosenberg
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Are allometric model parameters of aboveground biomass for trees phylogenetically constrained?
Plant Diversity, 2023 Knowledge of which biological and functional traits have, or lack, phylogenetic signal in a particular group of organisms is important to understanding the formation and functioning of biological communities.
Xing-Zhao Huang +4 more
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AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications
BMC Genomics, 2013 Background Due to the rapid progress of next-generation sequencing (NGS) facilities, an explosion of human whole genome data will become available in the coming years.
Van Geystelen Anneleen +2 more
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Folding and unfolding phylogenetic trees and networks [PDF]
, 2015 Phylogenetic networks are rooted, labelled directed acyclic graphs which are commonly used to represent reticulate evolution. There is a close relationship between phylogenetic networks and multi-labelled trees (MUL-trees).
C Semple +17 more
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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
bioRxiv, 2019 IQ-TREE (http://www.iqtree.org) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models ...
B. Q. Minh +6 more
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The identifiability of tree topology for phylogenetic models, including covarion and mixture models [PDF]
, 2005 For a model of molecular evolution to be useful for phylogenetic inference, the topology of evolutionary trees must be identifiable. That is, from a joint distribution the model predicts, it must be possible to recover the tree parameter.
Allman, Elizabeth S., Rhodes, John A.
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W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
Nucleic Acids Res., 2016 This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis.
Jana Trifinopoulos +3 more
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A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism [PDF]
PeerJ, 2021 The Copepoda is a clade of pancrustaceans containing 14,485 species that are extremely varied in their morphology and lifestyle. Not only do copepods dominate marine plankton and sediment communities and make up a sizeable component of the freshwater ...
James P. Bernot +2 more
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Nucleic Acids Res., 2016 Interactive Tree Of Life (http://itol.embl.de) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. It is freely available and open to everyone.
Ivica Letunic, P. Bork
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Phylogenetic mixtures on a single tree can mimic a tree of another topology [PDF]
, 2007 Phylogenetic mixtures model the inhomogeneous molecular evolution commonly observed in data. The performance of phylogenetic reconstruction methods where the underlying data is generated by a mixture model has stimulated considerable recent debate.
Matsen, Frederick A., Steel, Mike
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