Results 81 to 90 of about 489,513 (135)

Fusang: a framework for phylogenetic tree inference via deep learning. [PDF]

Nucleic Acids Res, 2023
Wang Z, Sun J, Gao Y, Xue Y, Zhang Y, Li K, Zhang W, Zhang C, Zu J, Zhang L.   +9 more
europepmc   +1 more source

Locating a tree in a phylogenetic network [PDF]

arXiv, 2010
Phylogenetic trees and networks are leaf-labelled graphs that are used to describe evolutionary histories of species. The Tree Containment problem asks whether a given phylogenetic tree is embedded in a given phylogenetic network. Given a phylogenetic network and a cluster of species, the Cluster Containment problem asks whether the given cluster is a ...
arxiv  

EvoZip: Efficient Compression of Large Collections of Evolutionary Trees [PDF]

arXiv, 2019
Phylogenetic trees represent evolutionary relationships among sets of organisms. Popular phylogenetic reconstruction approaches typically yield hundreds to thousands of trees on a common leafset. Storing and sharing such large collection of trees requires considerable amount of space and bandwidth.
arxiv  

Integrating SNVs and CNAs on a phylogenetic tree from single-cell DNA sequencing data. [PDF]

Genome Res, 2023
Zhang L, Bass HW, Irianto J, Mallory X.
europepmc   +1 more source

Spatial Phylogenetics of Florida Vascular Plants: The Effects of Calibration and Uncertainty on Diversity Estimates

iScience, 2019
Summary: Recent availability of biodiversity data resources has enabled an unprecedented ability to estimate phylogenetically based biodiversity metrics over broad scales.
Julie M. Allen, Charlotte C. Germain-Aubrey, Narayani Barve, Kurt M. Neubig, Lucas C. Majure, Shawn W. Laffan, Brent D. Mishler, Hannah L. Owens, Stephen A. Smith, W. Mark Whitten, J. Richard Abbott, Douglas E. Soltis, Robert Guralnick, Pamela S. Soltis   +13 more
doaj  

Three-Way Alignment Improves Multiple Sequence Alignment of Highly Diverged Sequences

Algorithms
The standard approach for constructing a phylogenetic tree from a set of sequences consists of two key stages. First, a multiple sequence alignment (MSA) of the sequences is computed.
Mahbubeh Askari Rad, Alibek Kruglikov, Xuhua Xia   +2 more
doaj   +1 more source

GPTree Cluster: phylogenetic tree cluster generator in the context of supertree inference. [PDF]

Bioinform Adv, 2023
Koshkarov A, Tahiri N.
europepmc   +1 more source

Robust Analysis of Phylogenetic Tree Space. [PDF]

Syst Biol, 2022
Smith MR.
europepmc   +1 more source

Impact of Phylogenetic Tree Completeness and Mis-specification of Sampling Fractions on Trait Dependent Diversification Models. [PDF]

Syst Biol, 2023
Mynard P, Algar AC, Lancaster LT, Bocedi G, Fahri F, Gubry-Rangin C, Lupiyaningdyah P, Nangoy M, Osborne OG, Papadopulos AST, Sudiana IM, Juliandi B, Travis JMJ, Herrera-Alsina L.   +13 more
europepmc   +1 more source

Learning Hyperbolic Embedding for Phylogenetic Tree Placement and Updates. [PDF]

Biology (Basel), 2022
Jiang Y, Tabaghi P, Mirarab S.
europepmc   +1 more source