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A General Substitution Matrix for Structural Phylogenetics [PDF]

open access: yesMolecular Biology and Evolution
Sequence-based maximum likelihood (ML) phylogenetics is a widely used method for inferring evolutionary relationships, which has illuminated the evolutionary histories of proteins and the organisms that harbour them.
Tal Pupko   +2 more
exaly   +3 more sources

Relaxed Phylogenetics and Dating with Confidence

open access: yesPLoS Biology, 2006
In phylogenetics, the unrooted model of phylogeny and the strict molecular clock model are two extremes of a continuum. Despite their dominance in phylogenetic inference, it is evident that both are biologically unrealistic and that the real evolutionary
Simon Ho   +2 more
exaly   +2 more sources

The dawn of relaxed phylogenetics

open access: yesPLoS Biology, 2023
Tracing the history of evolution across time is a primary goal of evolutionary biology. The 2006 publication of a landmark study on relaxed phylogenetics in PLOS Biology enabled biologists to shed light on evolution's tempo and shaped the future of ...
Antonis Rokas, Jacob L Steenwyk
exaly   +2 more sources

Taxonomic review of the genus Nycteola Hübner (Lepidoptera, Nolidae) from Korea including potential invasive pests [PDF]

open access: yesBiodiversity Data Journal, 2023
The genus Nycteola Hübner has been mainly distributed in the Old World and usually feeds on Fagaceae and Salicaceae, but Myrtaceae and Juglandaceae have also been reported. In Korea, the number of this genus has been changed from four to three after 2007,
Yeong-Bin Cha   +4 more
doaj   +3 more sources

Transcriptional dynamics of gametogenesis in the green seaweed Ulva mutabilis identifies an RWP-RK transcription factor linked to reproduction

open access: yesBMC Plant Biology, 2022
Background The molecular mechanism underlying sexual reproduction in land plants is well understood in model plants and is a target for crop improvement.
Xiaojie Liu   +7 more
doaj   +1 more source

First record of the peacock fly Callopistromyia annulipes (Diptera: Ulidiidae) in Romania [PDF]

open access: yesTravaux du Muséum National d’Histoire Naturelle “Grigore Antipa”, 2020
The peacock fly Callopistromyia annulipes (Macquart, 1855) is recorded for the first time in Romania, from several locations. Its current distribution in Europe and some data regarding the ecology of the species are presented.
Alexandru-Mihai Pintilioaie   +1 more
doaj   +3 more sources

Latitudinal Diversity Gradient in the Changing World: Retrospectives and Perspectives

open access: yesDiversity, 2022
The latitudinal diversity gradient (LDG) is one of the most extensive and important biodiversity patterns on the Earth. Various studies have established that species diversity increases with higher taxa numbers from the polar to the tropics.
Yu Zhang   +7 more
doaj   +1 more source

PANTHER: Making genome‐scale phylogenetics accessible to all

open access: yesProtein Science, 2021
Phylogenetics is a powerful tool for analyzing protein sequences, by inferring their evolutionary relationships to other proteins. However, phylogenetics analyses can be challenging: they are computationally expensive and must be performed carefully in ...
Paul D. Thomas   +5 more
semanticscholar   +1 more source

The complete chloroplast genome of Calophyllum soulattri Burm. f. (Calophyllaceae)

open access: yesMitochondrial DNA. Part B. Resources, 2023
Calophyllum soulattri Burm. f. (1768) is an evergreen tree native to Southeast Asia, Australia, and the Solomon Islands. It is known for its medicinal uses and has been utilized in traditional folk medicine.
Dexter G. Pahayo   +3 more
doaj   +1 more source

The first record of Trichocera (Saltrichocera) annulata (Diptera: Trichoceridae) in Romania, with additional data on Trichocera (Saltrichocera) maculipennis [PDF]

open access: yesTravaux du Muséum National d’Histoire Naturelle “Grigore Antipa”, 2020
The Romanian Trichoceridae fauna is poorly known. Trichocera (Saltrichocera) annulata Meigen, 1818 and Trichocera (Saltrichocera) maculipennis Meigen, 1818 are amongst the most widespread species in Europe, but the former species was not recorded from ...
Alexandru-Mihai Pintilioaie   +1 more
doaj   +3 more sources

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