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Biodiversity arks in the Anthropocene
Regional Sustainability, 2021 The Anthropocene proposal suggested that the Earth may have entered a new geological epoch, in which human activity and climate change are influencing the environment at global scale.
Honghu Meng +4 more
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Phylogenetic Insights on Patterns of HIV-1 Spread and the Design of Epidemic Control Measures
Viruses, 2022 Phylogenetics provides a unique structural framework to track the spread of viral diseases, such as HIV-1 (human immunodeficiency virus type 1), the causative agent of AIDS (acquired immunodeficiency syndrome) [...]
Bluma G. Brenner
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Survey of molecular phylogenetics
Plant, Soil and Environment, 2007 Rapidly increasing amount of biological data necessarily requires techniques that would enable to extract the information hidden in the data. Methods of molecular phylogenetics are commonly used tools as well as objects of continuous research within many
M. Talianová
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Tropical Principal Component Analysis and Its Application to Phylogenetics [PDF]
Bulletin of Mathematical Biology, 2017 Principal component analysis is a widely used method for the dimensionality reduction of a given data set in a high-dimensional Euclidean space. Here we define and analyze two analogues of principal component analysis in the setting of tropical geometry.
R. Yoshida, Leon Zhang, Xu Zhang
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Scientific Reports, 2022 Leptonetidae are tiny, rarely encountered spiders that mainly inhabit moist environments, such as caves, leaf litter, and rock piles. Because they are microhabitat specialists, most leptonetid species have short-range endemism, and rarely occur in ...
Jong-Hwa Oh, Sora Kim, Seunghwan Lee
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Phylogenetics of seed plants : An analysis of nucleotide sequences from the plastid gene rbcL
, 1993 We present the results of two exploratory parsimony analyses of DNA sequences from 475 and 499 species of seed plants, respectively, representing all major taxonomic groups.
James F. Smith
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Algorithms for Molecular Biology, 2023 Cancer progression and treatment can be informed by reconstructing its evolutionary history from tumor cells. Although many methods exist to estimate evolutionary trees (called phylogenies) from molecular sequences, traditional approaches assume the ...
Yunheng Han, Erin K. Molloy
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Modeling the Ecology and Evolution of Biodiversity: Introduction to the Special Issue
Diversity, 2022 Applying relevant statistical models to empirical data analysis has been considered a very important procedure for scientists to answer research questions in the fields of biodiversity, phylogeography, evolutionary biology, paleoecology, phylogenetics ...
Dwueng-Chwuan Jhwueng
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, 2017 Targeted enrichment of conserved genomic regions (e.g. ultraconserved elements or UCEs) has emerged as a promising tool for inferring evolutionary history in many organismal groups.
M. G. Branstetter +3 more
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Spatial phylogenetics of the native California flora
BMC Biology, 2017 California is a world floristic biodiversity hotspot where the terms neo- and paleo-endemism were first applied. Using spatial phylogenetics, it is now possible to evaluate biodiversity from an evolutionary standpoint, including discovering significant ...
A. Thornhill +8 more
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