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PhyloJS: Bridging phylogenetics and web development with a JavaScript utility library [PDF]
Ecology and EvolutionThere is an increasing number of libraries devoted to parsing, manipulating and visualising phylogenetic trees in JavaScript. Many of these libraries bundle tree manipulation with visualisation, but have limited ability to manipulate trees and lack ...
Leo A. Featherstone, Wytamma Wirth
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Thinking on your feet: potentially enhancing phylogenetic tree learning accessibility through a kinaesthetic approach [PDF]
Evolution: Education and OutreachBackground Phylogenetics is one of the main methodologies to understand cross-cutting principles of evolution, such as common ancestry and speciation. Phylogenetic trees, however, are reportedly challenging to teach and learn.
Telma G. Laurentino +4 more
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Resolving tumor evolution: a phylogenetic approach [PDF]
Journal of the National Cancer CenterThe evolutionary dynamics of cancer, characterized by its profound heterogeneity, demand sophisticated tools for a holistic understanding. This review delves into tumor phylogenetics, an essential approach bridging evolutionary biology with oncology ...
Lin Li +13 more
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Frontiers in Psychology, 2021 In this article we propose a novel method to estimate the frequency distribution of linguistic variables while controlling for statistical non-independence due to shared ancestry. Unlike previous approaches, our technique uses all available data, from language families large and small as well as from isolates, while controlling for different degrees of
Jäger, Gerhard, Wahle, Johannes
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Taxonomic review of the genus Nycteola Hübner (Lepidoptera, Nolidae) from Korea including potential invasive pests [PDF]
Biodiversity Data Journal, 2023 The genus Nycteola Hübner has been mainly distributed in the Old World and usually feeds on Fagaceae and Salicaceae, but Myrtaceae and Juglandaceae have also been reported. In Korea, the number of this genus has been changed from four to three after 2007,
Yeong-Bin Cha +4 more
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Journal of Software for Algebra and Geometry, 2021 We introduce the package PhylogeneticTrees for Macaulay2 which allows users to compute phylogenetic invariants for group-based tree models. We provide some background information on phylogenetic algebraic geometry and show how the package PhylogeneticTrees can be used to calculate a generating set for a phylogenetic ideal as well as a lower bound for ...
Elizabeth Gross +8 more
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PLOS Computational Biology, 2022 In phylogenetics, reconciliation is an approach to connect the history of two or more coevolving biological entities. The general idea of reconciliation is that a phylogenetic tree representing the evolution of an entity (e.g. homologous genes, symbionts…) can be drawn within another phylogenetic tree representing an encompassing entity (respectively ...
Menet, Hugo +2 more
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Microbial Phylogenetic Context Using Phylogenetic Outlines [PDF]
Genome Biology and Evolution, 2021 AbstractMicrobial studies typically involve the sequencing and assembly of draft genomes for individual microbes or whole microbiomes. Given a draft genome, one first task is to determine its phylogenetic context, that is, to place it relative to the set of related reference genomes.
Caner Bagci +3 more
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BMC Plant Biology, 2022 Background The molecular mechanism underlying sexual reproduction in land plants is well understood in model plants and is a target for crop improvement.
Xiaojie Liu +7 more
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