Results 21 to 30 of about 542,876 (367)
Maximum likelihood pandemic-scale phylogenetics
bioRxiv, 2022 Phylogenetics has a crucial role in genomic epidemiology. Enabled by unparalleled volumes of genome sequence data generated to study and help contain the COVID-19 pandemic, phylogenetic analyses of SARS-CoV-2 genomes have shed light on the virus’s ...
N. de Maio +5 more
semanticscholar +1 more source
Phylogenetic Comparative Methods on Phylogenetic Networks with Reticulations [PDF]
Systematic Biology, 2017 Abstract The goal of phylogenetic comparative methods (PCMs) is to study the distribution of quantitative traits among related species. The observed traits are often seen as the result of a Brownian Motion (BM) along the branches of a phylogenetic tree. Reticulation events such as hybridization, gene flow or horizontal gene transfer, can
Bastide, Paul +4 more
openaire +5 more sources
Phylogenetic context using phylogenetic outlines [PDF]
, 2021 AbstractMicrobial studies typically involve the sequencing and assembly of draft genomes for individual microbes or whole microbiomes. Given a draft genome, one first task is to determine its phylogenetic context, that is, to place it relative to the set of related reference genomes.
Caner Bagci +3 more
openaire +2 more sources
Biodiversity arks in the Anthropocene
Regional Sustainability, 2021 The Anthropocene proposal suggested that the Earth may have entered a new geological epoch, in which human activity and climate change are influencing the environment at global scale.
Honghu Meng +4 more
doaj +1 more source
Ecology and Evolution, 2020 Understanding the role of climate changes and geography as drivers of population divergence and speciation is a long‐standing goal of evolutionary biology and can inform conservation. In this study, we used restriction site‐associated DNA sequencing (RAD‐
Jian‐Hua Xiao +7 more
doaj +1 more source
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Systematic Biology, 2018 Bayesian inference of phylogeny using Markov chain Monte Carlo (MCMC) plays a central role in understanding evolutionary history from molecular sequence data.
A. Rambaut +4 more
semanticscholar +1 more source
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Bioinform., 2018 Summary After more than fifteen years of existence, the R package ape has continuously grown its contents, and has been used by a growing community of users. The release of version 5.0 has marked a leap towards a modern software for evolutionary analyses.
E. Paradis, K. Schliep
semanticscholar +1 more source
Phylogenetics of Cucumis (Cucurbitaceae) [PDF]
, 2007 Background: Melon, Cucumis melo, and cucumber, C. sativus, are among the most widely cultivated crops worldwide. Cucumis, as traditionally conceived, is geographically centered in Africa, with C. sativus and C.
Kocyan, Alexander +2 more
core +1 more source
Ecological Indicators, 2023 Species in transitional areas often display adaptive responses to climate change and such areas may be crucial for long-term biodiversity conservation.
Run Zhou +10 more
doaj +1 more source
Molecular Ecology Resources, 2019 Multigene and genomic data sets have become commonplace in the field of phylogenetics, but many existing tools are not designed for such data sets, which often makes the analysis time‐consuming and tedious. Here, we present PhyloSuite, a (cross‐platform,
Dong Zhang +6 more
semanticscholar +1 more source