Results 51 to 60 of about 455,803 (329)

The phylogenetics of Leucocytozoon caulleryi infecting broiler chickens in endemic areas in Indonesia [PDF]

Veterinary World, 2017
Aim: The objective of this research was to determine the species and strains of Leucocytozoon caulleryi and study the phylogenetics of L. caulleryi of broiler chickens in endemic areas in Indonesia.
Endang Suprihati, Wiwik Misaco Yuniarti
doaj   +1 more source

Combining morphological and genomic evidence to resolve species diversity and study speciation processes of the Pallenopsis patagonica (Pycnogonida) species complex

Frontiers in Zoology, 2019
Background Pallenopsis patagonica (Hoek, 1881) is a morphologically and genetically variable sea spider species whose taxonomic classification is challenging.
Jana S. Dömel, Till-Hendrik Macher, Lars Dietz, Sabrina Duncan, Christoph Mayer, Andrey Rozenberg, Katherine Wolcott, Florian Leese, Roland R. Melzer   +8 more
doaj   +1 more source

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

Bioinform., 2008
UNLABELLED A key element to a successful Markov chain Monte Carlo (MCMC) inference is the programming and run performance of the Markov chain.
J. Nylander, James C. Wilgenbusch, D. Warren, D. Swofford   +3 more
semanticscholar   +1 more source

Model Selection and Parameter Inference in Phylogenetics Using Nested Sampling [PDF]

Systematic Biology, 2017
&NA; Bayesian inference methods rely on numerical algorithms for both model selection and parameter inference. In general, these algorithms require a high computational effort to yield reliable estimates.
Patricio Maturana Russel, B. Brewer, S. Klaere, R. Bouckaert   +3 more
semanticscholar   +1 more source

A Format for Phylogenetic Placements [PDF]

PLoS ONE, 2012
We have developed a unified format for phylogenetic placements, that is, mappings of environmental sequence data (e.g. short reads) into a phylogenetic tree. We are motivated to do so by the growing number of tools for computing and post-processing phylogenetic placements, and the lack of an established standard for storing them.
Frederick A. Matsen, Alexandros Stamatakis, Aaron Gallagher, Noah G. Hoffman, Noah G. Hoffman   +4 more
openaire   +6 more sources

The Mitochondrial Genome in Nematode Phylogenetics

Frontiers in Ecology and Evolution, 2020
In recent decades, great strides have been made using various kinds of data including molecular sequences to clarify the phylogenetic relationships of nematodes.
E. Kern, Taeho Kim, Joong-Ki Park
semanticscholar   +1 more source

Climate Warming as a Possible Trigger of Keystone Mussel Population Decline in Oligotrophic Rivers at the Continental Scale

Scientific Reports, 2018
The effects of climate change on oligotrophic rivers and their communities are almost unknown, albeit these ecosystems are the primary habitat of the critically endangered freshwater pearl mussel and its host fishes, salmonids.
Ivan N. Bolotov, Alexander A. Makhrov, Mikhail Yu. Gofarov, Olga V. Aksenova, Paul E. Aspholm, Yulia V. Bespalaya, Mikhail B. Kabakov, Yulia S. Kolosova, Alexander V. Kondakov, Thomas Ofenböck, Andrew N. Ostrovsky, Igor Yu. Popov, Ted von Proschwitz, Mudīte Rudzīte, Māris Rudzītis, Svetlana E. Sokolova, Ilmari Valovirta, Ilya V. Vikhrev, Maxim V. Vinarski, Alexey A. Zotin   +19 more
doaj   +1 more source

HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment1

Applications in Plant Sciences, 2016
Premise of the study: Using sequence data generated via target enrichment for phylogenetics requires reassembly of high-throughput sequence reads into loci, presenting a number of bioinformatics challenges.
Matthew G. Johnson, E. Gardner, Yang Liu, R. Medina, B. Goffinet, A. J. Shaw, N. Zerega, N. Wickett   +7 more
semanticscholar   +1 more source

Thinking on your feet: potentially enhancing phylogenetic tree learning accessibility through a kinaesthetic approach. [PDF]

Evolution (N Y)
Background Phylogenetics is one of the main methodologies to understand cross-cutting principles of evolution, such as common ancestry and speciation. Phylogenetic trees, however, are reportedly challenging to teach and learn.
Laurentino TG, Scheller M, Glover G, Proulx MJ, de Sousa AA.   +4 more
europepmc   +2 more sources

Annotated check-list of Pteromalidae (Hymenoptera: Chalcidoidea) of Morocco. Part II.

Graellsia, 2021
En esta segunda parte, presentamos la subfamilia Pteromalinae en Marruecos, que incluye 86 especies pertenecientes a 50 géneros. Quince géneros y 37 especies se enumeran por primera vez en la fauna marroquí, de las cuales 9 han sido recientemente ...
Khadija Kissayi, Mircea-Dan Mitroiu, Latifa Rohi   +2 more
doaj   +1 more source