Results 51 to 60 of about 45,343 (323)

Evolution of substrate specificity in a retained enzyme driven by gene loss. [PDF]

, 2017
The connection between gene loss and the functional adaptation of retained proteins is still poorly understood. We apply phylogenomics and metabolic modeling to detect bacterial species that are evolving by gene loss, with the finding that ...
Babnigg, Gyorgy, Barona-Gómez, Francisco, Carrillo-Tripp, Mauricio, Edirisinghe, Janaka N, Endres, Michael, Henry, Christopher S, Joachimiak, Andrzej, Juárez-Vázquez, Ana Lilia, Medina-Ruíz, Sofía, Michalska, Karolina, Noda-García, Lianet, Santoyo-Flores, Julián, Ton-That, Hung, Verduzco-Castro, Ernesto A, Wu, Chenggang   +14 more
core   +1 more source

Tackling Rapid Radiations With Targeted Sequencing [PDF]

, 2020
In phylogenetic studies across angiosperms, at various taxonomic levels, polytomies have persisted despite efforts to resolve them by increasing sampling of taxa and loci.
Brewer, Grace E., Epitawalage, Niroshini, Fairlie, Isabel, Hahn, Marlene, Larridon, Isabel, Maguilla Salado, Enrique, Pokorny, Lisa, Villaverde, Tamara, Zuntini, Alexandre R.   +8 more
core   +1 more source

Phylogenomics, Origin and Diversification of Anthozoans (Phylum Cnidaria).

Systematic Biology, 2021
Anthozoan cnidarians (corals and sea anemones) include some of the world's most important foundation species, capable of building massive reef complexes that support entire ecosystems.
C. McFadden, A. Quattrini, M. Brugler, P. Cowman, L. Dueñas, M. Kitahara, D. A. Paz‐García, J. Reimer, E. Rodríguez   +8 more
semanticscholar   +1 more source

RNA-Seq and iTRAQ reveal multiple pathways involved in storage root formation and development in sweet potato (Ipomoea batatas L.)

BMC Plant Biology, 2019
Background Sweet potato (Ipomoea batatas L.) is the sixth most important food crop in the world. The formation and development of storage roots in sweet potato is a highly complicated and genetically programmed process. However, the underlying mechanisms
Tingting Dong, Mingku Zhu, Jiawen Yu, Rongpeng Han, Cheng Tang, Tao Xu, Jingran Liu, Zongyun Li   +7 more
doaj   +1 more source

The Cyclic AMP Receptor Protein, Crp, Is Required for the Decolorization of Acid Yellow 36 in Shewanella putrefaciens CN32

Frontiers in Microbiology, 2020
Shewanella shows good application potentials in the decolorization and detoxification of azo dye wastewater. However, the molecular mechanism of decolorization is still lacking. In this study, it was found that Shewanella putrefaciens CN32 exhibited good
Weijie Liu, Ying Chen, Xuge Zhou, Jiawen Liu, Jingrong Zhu, Shiwei Wang, Cong Liu, Di Sun   +7 more
doaj   +1 more source

Human brain evolution and the "Neuroevolutionary Time-depth Principle:" Implications for the Reclassification of fear-circuitry-related traits in DSM-V and for studying resilience to warzone-related posttraumatic stress disorder. [PDF]

, 2006
The DSM-III, DSM-IV, DSM-IV-TR and ICD-10 have judiciously minimized discussion of etiologies to distance clinical psychiatry from Freudian psychoanalysis.
Bracha, Dr. H. Stefan
core   +1 more source

Mitochondrial phylogenomics provides insights into the phylogeny and evolution of spiders (Arthropoda: Araneae)

Zoological Research, 2022
Spiders are among the most varied terrestrial predators, with highly diverse morphology, ecology, and behavior. Morphological and molecular data have greatly contributed to advances in the phylogeny and evolutionary dynamics of spiders.
Min Li, Wen-Ting Chen, Qi-Lin Zhang, Min Liu, Chengling Xing, Ya Cao, Fang-Zhen Luo, Ming-Long Yuan   +7 more
semanticscholar   +1 more source

Microbial phylogenomics: Branching out [PDF]

Nature, 2003
Has genomics overturned the family tree of microbial life? Thanks in part to often polarized debate, elements of a new synthesis are emerging.
Charlebois, R. L., Beiko, R. G., Ragan, M. A.   +2 more
openaire   +3 more sources

MATEdb, a data repository of high-quality metazoan transcriptome assemblies to accelerate phylogenomic studies

Peer Community Journal, 2022
With the advent of high throughput sequencing, the amount of genomic data available for animals (Metazoa) species has bloomed over the last decade, especially from transcriptomes due to lower sequencing costs and easier assembling process compared to ...
Fernández, Rosa, Tonzo, Vanina, Simón Guerrero, Carolina, Lozano-Fernandez, Jesus, Martínez-Redondo, Gemma I., Balart-García, Pau, Aristide, Leandro, Eleftheriadi, Klara, Vargas-Chávez, Carlos   +8 more
doaj   +1 more source

Maximize Resolution or Minimize Error? Using Genotyping-By-Sequencing to Investigate the Recent Diversification of Helianthemum (Cistaceae) [PDF]

, 2019
A robust phylogenetic framework, in terms of extensive geographical and taxonomic sampling, well-resolved species relationships and high certainty of tree topologies and branch length estimations, is critical in the study of macroevolutionary patterns ...
Aparicio Martínez, Abelardo, Fernández Mazuecos, Mario, González Albaladejo, Rafael, Martín Hernánz, Sara, Olangua Corral, María, Reyes Betancort, J. Alfredo, Rubio Pérez, Encarnación, Santos Guerra, Arnoldo   +7 more
core   +1 more source