Results 11 to 20 of about 8,374,602 (379)
Protein sequence databases [PDF]
Current Opinion in Chemical Biology, 2000 A variety of protein sequence databases exist, ranging from simple sequence repositories, which store data with little or no manual intervention in the creation of the records, to expertly curated universal databases that cover all species and in which the original sequence data are enhanced by the manual addition of further information in each ...
Apweiler, Rolf +2 more
+7 more sources
Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome
mSystems, 2023 Metaproteomics, a method for untargeted, high-throughput identification of proteins in complex samples, provides functional information about microbial communities and can tie functions to specific taxa.
Elliot M. Lee +8 more
doaj +1 more source
Closing the circle : current state and perspectives of circular RNA databases [PDF]
, 2021 Circular RNAs (circRNAs) are covalently closed RNA molecules that have been linked to various diseases, including cancer. However, a precise function and working mechanism are lacking for the larger majority.
Vandesompele, Jo +2 more
core +1 more source
The Landscape of Virus-Host Protein–Protein Interaction Databases
Frontiers in Microbiology, 2022 Knowledge of virus-host interactomes has advanced exponentially in the last decade by the use of high-throughput screening technologies to obtain a more comprehensive landscape of virus-host protein–protein interactions.
Gabriel Valiente
doaj +1 more source
DBToolkit: processing protein databases for peptide-centric proteomics [PDF]
Bioinform., 2005 Lennart Martens +2 more
openalex +2 more sources
Nucleic Acids Res., 2022 Much of the complexity within cells arises from functional and regulatory interactions among proteins. The core of these interactions is increasingly known, but novel interactions continue to be discovered, and the information remains scattered across ...
Damian Szklarczyk +12 more
semanticscholar +1 more source
ColabFold: making protein folding accessible to all
Nature Methods, 2022 ColabFold offers accelerated prediction of protein structures and complexes by combining the fast homology search of MMseqs2 with AlphaFold2 or RoseTTAFold.
M. Mirdita +2 more
semanticscholar +1 more source
ProClass protein family database [PDF]
Nucleic Acids Research, 1999 ProClass is a protein family database that organizes non-redundant sequence entries into families defined collectively by PIR superfamilies and PROSITE patterns. By combining global similarities and functional motifs into a single classification scheme, ProClass helps to reveal domain and family relationships and classify multi-domain proteins.
C H, Wu, S, Shivakumar, H, Huang
openaire +4 more sources
Virus Pop—Expanding Viral Databases by Protein Sequence Simulation
Viruses, 2023 The improvement of our knowledge of the virosphere, which includes unknown viruses, is a key area in virology. Metagenomics tools, which perform taxonomic assignation from high throughput sequencing datasets, are generally evaluated with datasets derived
Julia Kende +6 more
doaj +1 more source
Nucleic Acids Res., 2020 Cellular life depends on a complex web of functional associations between biomolecules. Among these associations, protein–protein interactions are particularly important due to their versatility, specificity and adaptability.
Damian Szklarczyk +11 more
semanticscholar +1 more source