The Future of Protein Secondary Structure Prediction Was Invented by Oleg Ptitsyn. [PDF]
Biomolecules, 2020 When Oleg Ptitsyn and his group published the first secondary structure prediction for a protein sequence, they started a research field that is still active today.
Rademaker D +5 more
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A secondary structure-based position-specific scoring matrix applied to the improvement in protein secondary structure prediction. [PDF]
PLoS One, 2021 Protein secondary structure prediction (SSP) has a variety of applications; however, there has been relatively limited improvement in accuracy for years.
Chen TR +4 more
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CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks [PDF]
BMC Bioinformatics, 2006 Background One-dimensional protein structures such as secondary structures or contact numbers are useful for three-dimensional structure prediction and helpful for intuitive understanding of the sequence-structure relationship.
Kinjo Akira R, Nishikawa Ken
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OCLSTM: Optimized convolutional and long short-term memory neural network model for protein secondary structure prediction. [PDF]
PLoS One, 2021 Protein secondary structure prediction is extremely important for determining the spatial structure and function of proteins. In this paper, we apply an optimized convolutional neural network and long short-term memory neural network models to protein ...
Zhao Y, Liu Y.
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A simple strategy to enhance the speed of protein secondary structure prediction without sacrificing accuracy. [PDF]
PLoS One, 2020 The secondary structure prediction of proteins is a classic topic of computational structural biology with a variety of applications. During the past decade, the accuracy of prediction achieved by state-of-the-art algorithms has been >80%; meanwhile, the
Juan SH, Chen TR, Lo WC.
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Frontiers in Bioengineering and Biotechnology, 2022 Prediction of the protein secondary structure is a key issue in protein science. Protein secondary structure prediction (PSSP) aims to construct a function that can map the amino acid sequence into the secondary structure so that the protein secondary ...
Xin Jin +9 more
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PS4: a next-generation dataset for protein single-sequence secondary structure prediction
BioTechniques, 2023 Protein secondary structure prediction is a subproblem of protein folding. A light-weight algorithm capable of accurately predicting secondary structure from only the protein residue sequence could provide useful input for tertiary structure prediction ...
Omar Peracha
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PSSP-MFFNet: A Multifeature Fusion Network for Protein Secondary Structure Prediction. [PDF]
ACS OmegaChen Y, Chen G, Chen CY.
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Prediction of protein secondary structure content [PDF]
Protein Engineering, Design and Selection, 1999 All existing algorithms for predicting the content of protein secondary structure elements have been based on the conventional amino-acid-composition, where no sequence coupling effects are taken into account. In this article, an algorithm was developed for predicting the content of protein secondary structure elements that was based on a new amino ...
W, Liu, K C, Chou
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Protein secondary structure prediction (PSSP) using different machine algorithms
Egyptian Journal of Medical Human Genetics, 2021 Background The computational biology approach has advanced exponentially in protein secondary structure prediction (PSSP), which is vital for the pharmaceutical industry.
Heba M. Afify +3 more
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