Results 41 to 50 of about 1,223,016 (311)

Comparative statistics for DNA and protein sequences: multiple sequence analysis. [PDF]

Proceedings of the National Academy of Sciences, 1985
Concepts and methods [Karlin, S. & Ghandour, G. (1985) Proc. Natl. Acad. Sci. USA 82, 5800-5804] for the analysis of patterns and relationships are extended to multiple DNA and protein sequences. Functionals include multiple sequence common word occurrence distributions, characterizations of high frequency shared words, and ascertainment of long ...
S, Karlin, G, Ghandour
openaire   +2 more sources

CISAPS: Complex Informational Spectrum for the Analysis of Protein Sequences [PDF]

, 2015
Complex informational spectrum analysis for protein sequences (CISAPS) and its web-based server are developed and presented. As recent studies show, only the use of the absolute spectrum in the analysis of protein sequences using the informational ...
Chrysostomou, Charalambos, H. Seker (7665395), N. Aydin (7665398), Seker, Huseyin, Aydin, Nizamettin, Charalambos Chrysostomou (5236139)   +5 more
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Taxonomic classification of metagenomic shotgun sequences with CARMA3. [PDF]

, 2011
Gerlach W, Stoye J. Taxonomic classification of metagenomic shotgun sequences with CARMA3. Nucleic Acids Res. 2011;39(14):e91.The vast majority of microbes are unculturable and thus cannot be sequenced by means of traditional methods.
Jens Stoye, Wolfgang Gerlach, Gerlach, Wolfgang, Stoye, Jens ; https://orcid.org/   +3 more
core   +2 more sources

MSALigMap—A Tool for Mapping Active-Site Amino Acids in PDB Structures onto Known and Novel Unannotated Homologous Sequences with Similar Function

Life, 2022
MSALigMap (Multiple Sequence Alignment Ligand Mapping) is a tool for mapping active-site amino-acid residues that bind selected ligands on to target protein sequences of interest.
Sameer Hassan, Sameena Haleemath Sameer, Mats Töpel, Henrik Aronsson   +3 more
doaj   +1 more source

Sequence specific interaction of the chromosomal proteins with DNA [PDF]

Nucleic Acids Research, 1977
Calf thymus chromatin was partially deproteinized by 0.6-1 M NaCl extraction. From the shape of the temperature derivative plot of its melting curve, the DNA in each chromatin was resolved into regions of exposed DNA, and DNA still complexed with proteins.
D, Tuan, C, Chetsanga, P M, Doty
openaire   +2 more sources

Fast and sensitive multiple alignment of large genomic sequences [PDF]

, 2003
Brudno M, Chapman M, Göttgens B, Batzoglou S, Morgenstern B. Fast and sensitive multiple alignment of large genomic sequences. BMC Bioinformatics.
Brudno, Michael, Batzoglou, S., Chapman, Mark A., Göttgens, Berthold, Batzoglou, Serafim, Morgenstern, Burkhard, Gottgens, B., Chapman, Michael, Berthold Göttgens, Brudno, M., Burkhard Morgenstern, Michael Chapman, Michael Brudno, Serafim Batzoglou   +13 more
core   +2 more sources

Modeling structure-function relationships in synthetic DNA sequences using attribute grammars [PDF]

, 2009
Recognizing that certain biological functions can be associated with specific DNA sequences has led various fields of biology to adopt the notion of the genetic part.
Cai, Yizhi; id_orcid, Peccoud, Jean, Cai Yizhi, Cai, Yizhi, Lux, Matthew W, Adam Laura, Lux Matthew W., Matthew W. Lux, Matthew W Lux, Jean Peccoud, Laura Adam, Adam, Laura, Yizhi Cai, Peccoud Jean   +13 more
core   +1 more source

PATTERNFINDER: combined analysis of DNA regulatory sequences and double-helix stability

BMC Bioinformatics, 2004
Background Regulatory regions that function in DNA replication and gene transcription contain specific sequences that bind proteins as well as less-specific sequences in which the double helix is often easy to unwind.
Huang Yanlin, Kowalski David
doaj   +1 more source

Improved Algorithm for Analysis of DNA Sequences Using Multiresolution Transformation

The Scientific World Journal, 2015
Bioinformatics and genomic signal processing use computational techniques to solve various biological problems. They aim to study the information allied with genetic materials such as the deoxyribonucleic acid (DNA), the ribonucleic acid (RNA), and the ...
T. M. Inbamalar, R. Sivakumar
doaj   +1 more source

Exploration of the Determinants of Protein Structure and Stability by Protein Design [PDF]

, 2005
Optimization of Rotamers by Iterative Techniques (ORBIT) has been used to calculate novel sequences for several small proteins. A partial sequence design (20 of 28 residues) is described for the zinc finger Zif268 (beta-beta-alpha) motif.
Sarisky, Catherine Ann
core   +1 more source