Results 11 to 20 of about 1,631,863 (295)
Protein secondary structure: entropy, correlations and prediction [PDF]
Bioinformatics, 2004 Abstract Motivation: Is protein secondary structure primarily determined by local interactions between residues closely spaced along the amino acid backbone or by non-local tertiary interactions? To answer this question, we measure the entropy densities of primary and secondary structure sequences, and the local inter-sequence mutual ...
Crooks, Gavin E., Brenner, Steven E.
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JPred4:a protein secondary structure prediction server [PDF]
Nucleic Acids Research, 2015 JPred
Alexey Drozdetskiy +6 more
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MAS NMR detection of hydrogen bonds for protein secondary structure characterization [PDF]
, 2020 Hydrogen bonds are essential for protein structure and function, making experimental access to long-range interactions between amide protons and heteroatoms invaluable. Here we show that measuring distance restraints involving backbone hydrogen atoms and
Friedrich, Daniel +3 more
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Frontiers in Bioengineering and Biotechnology, 2022 Prediction of the protein secondary structure is a key issue in protein science. Protein secondary structure prediction (PSSP) aims to construct a function that can map the amino acid sequence into the secondary structure so that the protein secondary ...
Xin Jin +9 more
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PS4: a next-generation dataset for protein single-sequence secondary structure prediction
BioTechniques, 2023 Protein secondary structure prediction is a subproblem of protein folding. A light-weight algorithm capable of accurately predicting secondary structure from only the protein residue sequence could provide useful input for tertiary structure prediction ...
Omar Peracha
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A convenient protein library for spectroscopic calibrations
Computational and Structural Biotechnology Journal, 2020 While several Raman, CD or FTIR spectral libraries are available for well-characterized proteins of known structure, proteins themselves are usually very difficult to acquire, preventing a convenient calibration of new instruments and new recording ...
Joëlle De Meutter, Erik Goormaghtigh
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Pervasive, conserved secondary structure in highly charged protein regions.
PLoS Computational Biology, 2023 Understanding how protein sequences confer function remains a defining challenge in molecular biology. Two approaches have yielded enormous insight yet are often pursued separately: structure-based, where sequence-encoded structures mediate function, and
Catherine G Triandafillou +3 more
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Discovering the Ultimate Limits of Protein Secondary Structure Prediction
Biomolecules, 2021 Secondary structure prediction (SSP) of proteins is an important structural biology technique with many applications. There have been ~300 algorithms published in the past seven decades with fierce competition in accuracy.
Chia-Tzu Ho +4 more
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Molecular cloning and analysis of Myc modulator 1 (Mm-1) from Bufo gargarizans (Amphibia: Anura)
Zoologia (Curitiba), 2010 The protein of Myc modulator 1 (Mm-1) has been reported to repress the transcriptional activity of the proto-oncogene c-Myc in humans. Moreover, it was shown to be the subunit 5 of human prefoldin (PFD).
Ning Wang +3 more
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ISSEC: inferring contacts among protein secondary structure elements using deep object detection
BMC Bioinformatics, 2020 Background The formation of contacts among protein secondary structure elements (SSEs) is an important step in protein folding as it determines topology of protein tertiary structure; hence, inferring inter-SSE contacts is crucial to protein structure ...
Qi Zhang +6 more
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