Results 11 to 20 of about 13,913,476 (302)
Linkers of secondary structures in proteins [PDF]
Protein Science, 1997 AbstractLinkers that connect repeating secondary structures fall into conformational classes based on distance and main‐chain torsion clustering. A data set of 300 unique protein chains with low pairwise sequence identity was clustered into only a few groups representing the preferred motifs.
V, Geetha, P J, Munson
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Domain discovery method for topological profile searches in protein structures [PDF]
, 2004 We describe a method for automated domain discovery for topological profile searches in protein structures. The method is used in a system TOPStructure for fast prediction of CATH classification for protein structures (given as PDB files).
Viksna, J, Gilbert, D, Torrance, G
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Comparative visualization of protein secondary structures [PDF]
BMC Bioinformatics, 2017 Protein function is determined by many factors, namely by its constitution, spatial arrangement, and dynamic behavior. Studying these factors helps the biochemists and biologists to better understand the protein behavior and to design proteins with modified properties.
Lucia Kocincová +5 more
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Properties and origins of protein secondary structure [PDF]
Physical Review E, 1994 12 pages (+4 figures, included in a single postscript file), LaTeX + RevTeX 3 ...
Socci, Nicholas D. +2 more
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Bayesian Segmentation of Protein Secondary Structure [PDF]
Journal of Computational Biology, 2000 We present a novel method for predicting the secondary structure of a protein from its amino acid sequence. Most existing methods predict each position in turn based on a local window of residues, sliding this window along the length of the sequence. In contrast, we develop a probabilistic model of protein sequence/structure relationships in terms of ...
Scott C. Schmidler +2 more
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Prediction of protein-protein interaction types using association rule based classification [PDF]
, 2009 This article has been made available through the Brunel Open Access Publishing Fund - Copyright @ 2009 Park et alBackground: Protein-protein interactions (PPI) can be classified according to their characteristics into, for example obligate or transient ...
José A Reyes +14 more
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SSEP: secondary structural elements of proteins [PDF]
Nucleic Acids Research, 2003 SSEP is a comprehensive resource for accessing information related to the secondary structural elements present in the 25 and 90% non-redundant protein chains. The database contains 1771 protein chains from 1670 protein structures and 6182 protein chains from 5425 protein structures in 25 and 90% non-redundant protein chains, respectively.
Shanthi, V +4 more
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Improving the accuracy of protein secondary structure prediction using structural alignment [PDF]
, 2006 Background: The accuracy of protein secondary structure prediction has steadily improved over the past 30 years. Now many secondary structure prediction methods routinely achieve an accuracy (Q3) of about 75%.
Wishart, D.S. +3 more
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A convenient protein library for spectroscopic calibrations
Computational and Structural Biotechnology Journal, 2020 While several Raman, CD or FTIR spectral libraries are available for well-characterized proteins of known structure, proteins themselves are usually very difficult to acquire, preventing a convenient calibration of new instruments and new recording ...
Joëlle De Meutter, Erik Goormaghtigh
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Molecular cloning and analysis of Myc modulator 1 (Mm-1) from Bufo gargarizans (Amphibia: Anura)
Zoologia (Curitiba), 2010 The protein of Myc modulator 1 (Mm-1) has been reported to repress the transcriptional activity of the proto-oncogene c-Myc in humans. Moreover, it was shown to be the subunit 5 of human prefoldin (PFD).
Ning Wang +3 more
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