Results 21 to 30 of about 977,591 (119)

Combining protein evolution and secondary structure [PDF]

Molecular Biology and Evolution, 1996
An evolutionary model that combines protein secondary structure and amino acid replacement is introduced. It allows likelihood analysis of aligned protein sequences and does not require the underlying secondary (or tertiary) structures of these sequences to be known.
J L, Thorne, N, Goldman, D T, Jones
openaire   +2 more sources

Electrostatic interactions and secondary structures in proteins

Biophysical Journal, 1980
In an attempt to understand the occurrences of secondary forms in proteins, we have calculated approximate free energies for a large set of regular secondary regions and have compared several methods for choosing a single molecular conformation. Approximate conformational free energies have been obtained by directly calculating electrostatic energies ...
Jernigan, R.L., Miyazawa, S., Szu, S.C.
openaire   +2 more sources

The Secondary Structure of Proteins in the Thylakoid Membrane

Zeitschrift für Naturforschung C, 1973
With reference spectra derived from proteins of known structure (CHEN, YANG, and MARTINEZ, Biochemistry 11, 4120 [1972]) a better approximation of the circular dichroism spectrum of fragments of the thylakoid membrane is achieved, than by the use of polylysine as reference substance.
W, Menke, R D, Hirtz
openaire   +2 more sources

Protein Secondary Structures

, 2017
Presentation of protein secondary structures.
openaire   +1 more source

Too close for comfort: Self-crowding transforms protein structure and stability beyond volume exclusion. [PDF]

Protein Sci
Olgenblum GI, Levy YN, Harries D.
europepmc   +1 more source

Detection of protein symmetry and structural rearrangements using secondary structure elements. [PDF]

Protein Sci
Lin R, Ahnert SE.
europepmc   +1 more source

A Novel Machine-Learning Based Method for Resolving Secondary Structure Topology in Medium-Resolution Cryo-EM Density Maps. [PDF]

Int J Mol Sci
Behkamal B, Etemadheravi MP, Mahmoodjanloo A, Mansoori A, Naghibzadeh M, Al Nasr K, Saberi MR.   +6 more
europepmc   +1 more source

Nature's economy as blueprint: regional overlap & block-based algorithm for protein design. [PDF]

Front Bioinform
Retana-Fonseca HA, Damián-Tentle R, Pineda LA, Altamirano-Bustamante MM.   +3 more
europepmc   +1 more source

AcrIIA8 is a putative phage structural protein of the HTJ2 family that does not inhibit Streptococcus pyogenes Cas9. [PDF]

Protein Sci
An SY, Kim I, Hong SH, Kim EH, Suh JY.
europepmc   +1 more source

ConforFold recovers alternative protein conformations beyond MSA subsampling. [PDF]

Protein Sci
Syrlybaeva R, Strauch EM.
europepmc   +1 more source