Results 51 to 60 of about 180,875 (351)

Elucidation of the Correlation between Heme Distortion and Tertiary Structure of the Heme-Binding Pocket Using a Convolutional Neural Network

open access: yesBiomolecules, 2022
Heme proteins serve diverse and pivotal biological functions. Therefore, clarifying the mechanisms of these diverse functions of heme is a crucial scientific topic. Distortion of heme porphyrin is one of the key factors regulating the chemical properties
Hiroko X. Kondo   +5 more
doaj   +1 more source

Les mécanismes de repliement des protéines solubles [PDF]

open access: yesBiotechnologie, Agronomie, Société et Environnement, 2000
Mechanisms of folding of soluble proteins. The function of a protein is carried out by its three-dimensional structure. The rules for translation of the information encoded by DNAinto an amino acid sequence are well known.
Brasseur B., Benhabilès N., Thomas A.
doaj  

Development and Validation of Optimization Methods for the Design of Protein Sequences and Combinatorial Libraries [PDF]

open access: yes, 2009
To facilitate the design of protein sequences with desired properties, simulation techniques have been developed to allow large portions of amino acid sequence space to be evaluated by computer.
Allen, Benjamin Daniel
core   +1 more source

An Algebro-topological description of protein domain structure. [PDF]

open access: yesPLoS ONE, 2011
The space of possible protein structures appears vast and continuous, and the relationship between primary, secondary and tertiary structure levels is complex.
Robert Clark Penner   +3 more
doaj   +1 more source

Bioinformatics Analysis of the NOT5 Gene in Saccharomyces uvarum

open access: yesShipin gongye ke-ji, 2022
Objective: In this paper, we obtained the NOT5 gene from Saccharomyces uvarum by transcriptome analysis. Analysis of its biological information can lay the foundation for the later study of the role of the gene.
Shujin DING   +5 more
doaj   +1 more source

Human growth hormone inclusion bodies present native-like secondary and tertiary structures which can be preserved by mild solubilization for refolding

open access: yesMicrobial Cell Factories, 2022
Background Native-like secondary structures and biological activity have been described for proteins in inclusion bodies (IBs). Tertiary structure analysis, however, is hampered due to the necessity of mild solubilization conditions.
Rosa Maria Chura-Chambi   +2 more
doaj   +1 more source

Flexible protein folding by ant colony optimization [PDF]

open access: yes, 2008
Protein structure prediction is one of the most challenging topics in bioinformatics. As the protein structure is found to be closely related to its functions, predicting the folding structure of a protein to judge its functions is meaningful to the ...
Hu, X., Li, Y., Zhang, J.
core   +1 more source

Rosetta Protein Structure Prediction from Hydroxyl Radical Protein Footprinting Mass Spectrometry Data

open access: yesAnalytical Chemistry, 2018
In recent years mass spectrometry-based covalent labeling techniques such as hydroxyl radical footprinting (HRF) have emerged as valuable structural biology techniques yielding information on protein tertiary structure.
Melanie L. Aprahamian   +3 more
semanticscholar   +1 more source

Protein-Ligand Interactions: Docking, Design and Conformation Change [PDF]

open access: yes, 2003
Virtual ligand screening has proven to be a successful strategy in drug design. An in house-developed procedure (HierDock), a coarse grain docking method followed by a fine grain search procedure, was used to determine the binding site for sugars in the
Datta, Deepshikha
core   +1 more source

A systematic structural comparison of all solved small proteins deposited in PDB. The effect of disulfide bonds in protein fold

open access: yesComputational and Structural Biotechnology Journal, 2021
Defensins are small proteins, usually ranging from 3 to 6 kDa, amphipathic, disulfide-rich, and with a small or even absent hydrophobic core. Since a hydrophobic core is generally found in globular proteins that fold in an aqueous solvent, the peculiar ...
Mariana H. Moreira   +3 more
doaj   +1 more source

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