Results 21 to 30 of about 763,163 (226)
Jeeva: Enterprise Grid-enabled Web Portal for Protein Secondary Structure Prediction [PDF]
, 2008 This paper presents a Grid portal for protein secondary structure prediction developed by using services of Aneka, a .NET-based enterprise Grid technology.
Buyya, Rajkumar +3 more
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Protein secondary structure: Entropy, correlations and prediction [PDF]
, 2003 Is protein secondary structure primarily determined by local interactions between residues closely spaced along the amino acid backbone, or by non-local tertiary interactions?
Brenner, Steven E., Crooks, Gavin E.
core +6 more sources
(PS)2-v2: template-based protein structure prediction server
BMC Bioinformatics, 2009 Background Template selection and target-template alignment are critical steps for template-based modeling (TBM) methods. To identify the template for the twilight zone of 15~25% sequence similarity between targets and templates is still difficulty for ...
Hwang Jenn-Kang +2 more
doaj +1 more source
Blind protein structure prediction using accelerated free-energy simulations. [PDF]
, 2016 We report a key proof of principle of a new acceleration method [Modeling Employing Limited Data (MELD)] for predicting protein structures by molecular dynamics simulation.
Brini, Emiliano +4 more
core +1 more source
BMC Bioinformatics, 2020 Background Whenever suitable template structures are not available, usage of fragment-based protein structure prediction becomes the only practical alternative as pure ab initio techniques require massive computational resources even for very small ...
Jad Abbass, Jean-Christophe Nebel
doaj +1 more source
Advances in protein tertiary structure prediction
Biomedical and Biotechnology Research Journal, 2018 Proteins are composed of linear chains of amino acids that form a unique three-dimensional structure in their native environment. Such native structure favors the proteins to perform their biochemical activity.
Tayebeh Farhadi
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Optimized bio-inspired kernels with twin support vector machine using low identity sequences to solve imbalance multiclass classification [PDF]
, 2019 The function of enzymes is performed differently depending on their bio-chemical mechanisms and important to the prediction of protein structure and function.
Guramand, S.K. +5 more
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Prediction of protein structure [PDF]
Current Biology, 2000 Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.Nucleic Acids Res 1997, 25:3389-3402Bowie JU, Eisenberg D: Inverted protein structure prediction.
openaire +2 more sources
Deep learning methods in protein structure prediction
Computational and Structural Biotechnology Journal, 2020 Protein Structure Prediction is a central topic in Structural Bioinformatics. Since the ’60s statistical methods, followed by increasingly complex Machine Learning and recently Deep Learning methods, have been employed to predict protein structural ...
Mirko Torrisi +2 more
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RosettaBackrub--a web server for flexible backbone protein structure modeling and design. [PDF]
, 2010 The RosettaBackrub server (http://kortemmelab.ucsf.edu/backrub) implements the Backrub method, derived from observations of alternative conformations in high-resolution protein crystal structures, for flexible backbone protein modeling.
Friedland, Gregory F +4 more
core +2 more sources