Results 131 to 140 of about 123,625 (288)

Challenges in Bringing Pangenome Research Into Breeding: A Case Study in Rice

Plant Biotechnology Journal, EarlyView.
ABSTRACT Crop breeding has entered the pangenomics era, unlocking a far more comprehensive view of genetic diversity than a single reference genome can capture. In rice (Oryza sativa), a staple crop critical to global food security, the construction of pangenome resources has uncovered extensive structural variations (SVs), presence/absence variations (
Shuai Nie, Fangping Li, Risheng Li, Jian Wang, Yamei Ma, Chon Kit Kenneth Chan, Junliang Zhao, Haifei Hu   +7 more
wiley   +1 more source

Dynamics of Gene and Allelic Expression During Modern Hybrid Maize Breeding

Plant Biotechnology Journal, EarlyView.
ABSTRACT Maize breeding has greatly improved yield through single‐cross hybrids, but the underlying gene regulatory changes remain unclear. This study analysed transcriptomes of landmark maize hybrids and their parents across developmental stages and planting densities.
Xuyang Liu, Yongxiang Li, Chunhui Li, Dengfeng Zhang, Guanhua He, Hui Liu, Shumin Sun, Yu Li, Mei Guo, Tianyu Wang   +9 more
wiley   +1 more source

Quantitative trait loci (QTL) analysis of leaf related traits in spinach (Spinacia oleracea L.). [PDF]

BMC Plant Biol, 2021
Liu Z, She H, Xu Z, Zhang H, Li G, Zhang S, Qian W.   +6 more
europepmc   +1 more source

Statistical Modeling of Epistasis and Linkage Decay using Logic Regression [PDF]

, 2007
Logic regression has been recognized as a tool that can identify and model non-additive genetic interactions using Boolean logic groups. Logic regression, TASSEL-GLM and SAS-GLM were compared for analytical precision using a previously characterized ...
John A. Henning, P Szű, Thomas Parker, W F. Mahaffee   +3 more
core   +1 more source

The Rice E3 Ubiquitin Ligase Gene OsPUB77 Regulates Head Milled Rice Rate by Affecting Grain Starch Accumulation

Plant Biotechnology Journal, EarlyView.
ABSTRACT Head milled rice rate (HMRR) is a critical trait determining rice yield and economic value, yet its genetic basis remains poorly understood. Here, through genome‐wide association study across multiple environments, we identified a major QTL, qHMRR4‐2, and pinpointed OsPUB77, a U‐box E3 ubiquitin ligase, as the causal gene.
Shuai Nie, Luo Chen, Leilei Kong, Minhua Zheng, Jingfang Dong, Song Bai, Dilin Liu, Shaohong Zhang, Hao Chen, Haifei Hu, Xin Luan, Junliang Zhao, Wu Yang   +12 more
wiley   +1 more source

QTL Mapping Combined With Transcriptome Analysis to Identify Candidate Genes for Silique Number in Rapeseed

Journal of Sustainable Agriculture and Environment
Silique number is an important yield trait in rapeseed. Identifying the genetic loci and analyzing the molecular mechanism of this trait are of great significance for increasing rapeseed yield.
Xiaoxiao Zheng, Fengjie Cheng, Shuyu Li, Rou Xia, Yutong Sun, Yuwen Wang, Wen Zhai, Jun Chen, Jie Xiong, Ge Ding, Bingchao Zhang, Laiqiang Song, Lunlin Chen   +12 more
doaj   +1 more source

AhBWR15, A Novel RLK Gene, Confers Resistance to Ralstonia solanacearum in Peanut

Plant Biotechnology Journal, EarlyView.
ABSTRACT Bacterial wilt (BW), a severe soil‐borne disease caused by Ralstonia solanacearum, significantly impedes global peanut production. Despite its impact, the mechanisms underlying BW resistance in peanut remain unclear. Herein, we selected the highly resistant variety Nongdahua108 (H108) and the susceptible variety Nongdahua107 (H107) to develop ...
Zenghui Cao, Kai Zhao, Hao Li, Xingli Ma, Di Cao, Yanzhe Li, Sasa Hu, Qian Ma, Yaoyao Li, Yi Fan, Mengtian Hou, Kunkun Zhao, Ding Qiu, Fangping Gong, Zhongfeng Li, Rui Ren, Dongmei Yin   +16 more
wiley   +1 more source

First identification of two co-existing genome-wide significant sex quantitative trait loci (QTL) in red tilapia using integrative QTL mapping. [PDF]

Zool Res, 2022
Zhu ZX, Lin YL, Ai CH, Xiong YY, Huang DD, Yao YY, Liu TD, Chen CH, Lin HR, Xia JH.   +9 more
europepmc   +1 more source

Quantifying microbiota impact on plant traits for the guidance of breeding programs

New Phytologist, EarlyView.
Manuel Blouin, Olivier Crépin, Cécile Blanchard, Milena Gonzalo, Olivier Lamotte, Samuel Jacquiod   +5 more
wiley   +1 more source

DNAwhisper: An Integrated Deep Learning Pyramidal Framework for Multi‐Trait Genomic Prediction and Adaptive Marker Prioritisation

Plant Biotechnology Journal, EarlyView.
ABSTRACT Genomic selection (GS) is critical for accelerating genetic gain in modern plant breeding. Deep learning approaches offer powerful non‐linear representation capabilities for modelling non‐additive effects. However, their application in GS remains restricted, as high‐dimensional, low‐sample and noisy data hinder the identification of ...
Yuexin Ma, Xiang Li, Xiaohao Ji, Chunying Wang, Di Zhang, Tingting Zhai, Haibo Wang, Ping Liu   +7 more
wiley   +1 more source