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OmiGA for ultra-efficient molecular quantitative trait loci mapping [PDF]

open access: yesNature Communications
Molecular quantitative trait loci (molQTL) mapping is one of the most popular approaches to systematically characterize functional impacts of genomic variants, leading to advanced understanding of the regulatory mechanisms underpinning complex traits and
Jinyan Teng   +6 more
doaj   +2 more sources

Integrating axis quantitative trait loci looks beyond cell types and offers insights into brain-related traits [PDF]

open access: yesNature Communications
Genome-wide association studies have identified many loci for brain disorders, but most non-coding variants fail to colocalize with bulk expression quantitative trait loci. Single-cell expression quantitative trait loci studies capture cell-type-specific
Lida Wang   +8 more
doaj   +2 more sources

Bayes factors for detection of Quantitative Trait Loci [PDF]

open access: yesGenetics Selection Evolution, 2001
A fundamental issue in quantitative trait locus (QTL) mapping is to determine the plausibility of the presence of a QTL at a given genome location. Bayesian analysis offers an attractive way of testing alternative models (here, QTL vs.
Pérez-Enciso Miguel   +2 more
doaj   +4 more sources

Overcoming collaboration barriers in quantitative trait loci analysis [PDF]

open access: yesCell Genomics
In this issue of Cell Genomics, Choi et al.1 report a novel approach, privateQTL, which leverages secure multiparty computation (MPC) to enable federated expression quantitative trait loci (eQTL) mapping across institutions without compromising data ...
Wen Zhang, Xiaohong Wu, Jing Gong
doaj   +2 more sources

Secure and federated quantitative trait loci mapping with privateQTL [PDF]

open access: yesCell Genomics
Summary: Understanding the relationship between genotypes and phenotypes is crucial for advancing personalized medicine. Expression quantitative trait loci (eQTL) mapping plays a significant role by correlating genetic variants to gene expression levels.
Yoolim Annie Choi   +4 more
doaj   +2 more sources

Quantitative Trait Loci: A Meta-analysis [PDF]

open access: yesGenetics, 2000
Abstract This article presents a method to combine QTL results from different independent analyses. This method provides a modified Akaike criterion that can be used to decide how many QTL are actually represented by the QTL detected in different experiments. This criterion is computed to choose between models with one, two, three, etc.,
Goffinet, Bruno, Gerber, Sophie
openaire   +3 more sources

Investigation of Splicing Quantitative Trait Loci in [PDF]

open access: yesGenomics & Informatics, 2016
The alteration of alternative splicing patterns has an effect on the quantification of functional proteins, leading to phenotype variation. The splicing quantitative trait locus (sQTL) is one of the main genetic elements affecting splicing patterns. Here,
Wonseok Yoo   +3 more
doaj   +1 more source

Morphometric and Genetic Description of Trophic Adaptations in Cichlid Fishes

open access: yesBiology, 2022
Since Darwin, biologists have sought to understand the evolution and origins of phenotypic adaptations. The skull is particularly diverse due to intense natural selection on feeding biomechanics.
Leah DeLorenzo   +8 more
doaj   +1 more source

Quantitative Trait Loci for Murine Growth [PDF]

open access: yesGenetics, 1996
Abstract Body size is an archetypal quantitative trait with variation due to the segregation of many gene loci, each of relatively minor effect, and the environment. We examine the effects of quantitative trait loci (QTLs) on age-specific body weights and growth in the F2 intercross of the LG/J and SM/J strains of inbred mice.
Cheverud J.M.   +5 more
openaire   +3 more sources

Pan-Genomic Regulation of Gene Expression in Normal and Pathological Human Placentas

open access: yesCells, 2023
In this study, we attempted to find genetic variants affecting gene expression (eQTL = expression Quantitative Trait Loci) in the human placenta in normal and pathological situations.
Clara Apicella   +12 more
doaj   +1 more source

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