Results 31 to 40 of about 5,500,427 (306)
Plants, 2023 Caryopteris x Clandonensis, also known as bluebeard, is an ornamental plant containing a large variety of terpenes and terpene-like compounds. Four different cultivars were subjected to a principal component analysis to elucidate variations in terpenoid ...
Manfred Ritz +3 more
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Building a Pan-Genome Reference for a Population [PDF]
Journal of Computational Biology, 2015 Abstract A reference genome is a high quality individual genome that is used as a coordinate system for the genomes of a population, or genomes of closely related subspecies. Given a set of genomes partitioned by homology into alignment blocks we formalize the problem of ordering and orienting the blocks such that the resulting ...
Ngan Nguyen +8 more
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The reference genome and organelle genomes of wasabi (Eutrema japoniacum)
Frontiers in Genetics, 2022 Wasabi (Eutrema japonicum) is one of the most famous vegetable crops in the family Brassicaceae. However, a limited genomic resource is available, which hinders genomic breeding and understanding of the genetic basis of vital traits. Here, we generated the genome assembly of wasabi using the hybrid genome assembly strategy, which combined the Nanopore ...
Hexia Liu +8 more
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An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes [PDF]
Nature Communications, 2016 Abstract Human genomes are routinely compared against a universal reference. However, this strategy could miss population-specific and personal genomic variations, which may be detected more efficiently using an ethnically relevant or personal reference.
Cho, Yun Sung +16 more
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Plant pan-genomes are the new reference [PDF]
Nature Plants, 2020 Recent years have seen a surge in plant genome sequencing projects and the comparison of multiple related individuals. The high degree of genomic variation observed led to the realization that single reference genomes do not represent the diversity within a species, and led to the expansion of the pan-genome concept.
Philipp E. Bayer +4 more
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Pig genome sequence - analysis and publication strategy [PDF]
, 2010 Background The pig genome is being sequenced and characterised under the auspices of the Swine Genome Sequencing Consortium. The sequencing strategy followed a hybrid approach combining hierarchical shotgun sequencing of BAC clones and whole genome ...
Fredholm, M. +49 more
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Identity and compatibility of reference genome resources [PDF]
NAR Genomics and Bioinformatics, 2021 Genome analysis relies on reference data like sequences, feature annotations, and aligner indexes. These data can be found in many versions from many sources, making it challenging to identify and assess compatibility among them. For example, how can you determine which indexes are derived from identical raw sequence files, or which annotations share a
Michał Stolarczyk +2 more
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Aquatic Sciences and Engineering, 2023 Genomic studies have largely been accelerated by the advances of next generation sequencing technologies since the beginning of the millennium. This, in turn, has motivated the generation of more reference genome assemblies not only in model organisms ...
Münevver Oral
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Frontiers in Microbiology, 2018 As an industrial bacterium, Bacillus licheniformis DW2 produces bacitracin which is an important antibiotic for many pathogenic microorganisms. Our previous study showed AbrB-knockout could significantly increase the production of bacitracin. Accordingly,
Cheng-Cheng Shu +6 more
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Microorganisms, 2020 Anthrax is a serious infectious disease caused by the gram-positive and spore-forming bacterium Bacillus anthracis. In Italy, anthrax is an endemic disease with sporadic cases each year and few outbreaks, especially in Southern Italy.
Alexandra Chiaverini +9 more
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