Results 31 to 40 of about 781,120 (260)

The reference genome and organelle genomes of wasabi (Eutrema japoniacum)

open access: yesFrontiers in Genetics, 2022
Wasabi (Eutrema japonicum) is one of the most famous vegetable crops in the family Brassicaceae. However, a limited genomic resource is available, which hinders genomic breeding and understanding of the genetic basis of vital traits. Here, we generated the genome assembly of wasabi using the hybrid genome assembly strategy, which combined the Nanopore ...
Hexia Liu   +8 more
openaire   +3 more sources

Plant pan-genomes are the new reference [PDF]

open access: yesNature Plants, 2020
Recent years have seen a surge in plant genome sequencing projects and the comparison of multiple related individuals. The high degree of genomic variation observed led to the realization that single reference genomes do not represent the diversity within a species, and led to the expansion of the pan-genome concept.
Philipp E. Bayer   +4 more
openaire   +5 more sources

What Reference Genome Assemblies Tell Us and How to Detect the Best Available Version: A Case Study in Trout

open access: yesAquatic Sciences and Engineering, 2023
Genomic studies have largely been accelerated by the advances of next generation sequencing technologies since the beginning of the millennium. This, in turn, has motivated the generation of more reference genome assemblies not only in model organisms ...
Münevver Oral
doaj   +1 more source

Ocean Genomes: reference genome resources for marine vertebrates. [PDF]

open access: yesNPJ Biodivers
Abstract We present Ocean Genomes, a program dedicated to producing reference genome resources to facilitate improved monitoring approaches and management outcomes for marine vertebrate biodiversity. Ocean Genomes will generate high-quality reference genomes of representatives of all marine vertebrate families and additional high-conservation-
Parata L   +13 more
europepmc   +3 more sources

Whole Genome Sequencing for Studying Bacillus anthracis from an Outbreak in the Abruzzo Region of Italy

open access: yesMicroorganisms, 2020
Anthrax is a serious infectious disease caused by the gram-positive and spore-forming bacterium Bacillus anthracis. In Italy, anthrax is an endemic disease with sporadic cases each year and few outbreaks, especially in Southern Italy.
Alexandra Chiaverini   +9 more
doaj   +1 more source

Inverted genomic regions between reference genome builds in humans impact imputation accuracy and decrease the power of association testing

open access: yesHGG Advances, 2023
Summary: Over the last two decades, the human reference genome has undergone multiple updates as we complete a linear representation of our genome. Two versions of human references are currently used in the biomedical literature, GRCh37/hg19 and GRCh38 ...
Xin Sheng   +6 more
doaj   +1 more source

Analyzing AbrB-Knockout Effects through Genome and Transcriptome Sequencing of Bacillus licheniformis DW2

open access: yesFrontiers in Microbiology, 2018
As an industrial bacterium, Bacillus licheniformis DW2 produces bacitracin which is an important antibiotic for many pathogenic microorganisms. Our previous study showed AbrB-knockout could significantly increase the production of bacitracin. Accordingly,
Cheng-Cheng Shu   +6 more
doaj   +1 more source

Will long-read sequencing technologies replace short-read sequencing technologies in the next 10 years?

open access: yesAfrican Journal of Laboratory Medicine, 2020
No abstract available.
Boluwatife A. Adewale
doaj   +1 more source

A Genomic Reference Panel for Drosophila serrata [PDF]

open access: yesG3 Genes|Genomes|Genetics, 2018
Abstract Here we describe a collection of re-sequenced inbred lines of Drosophila serrata, sampled from a natural population situated deep within the species endemic distribution in Brisbane, Australia. D. serrata is a member of the speciose montium group whose members inhabit much of south east Asia and has been well studied for ...
Reddiex, Adam J.   +2 more
openaire   +5 more sources

A reference-grade wild soybean genome [PDF]

open access: yesNature Communications, 2019
AbstractEfficient crop improvement depends on the application of accurate genetic information contained in diverse germplasm resources. Here we report a reference-grade genome of wild soybean accession W05, with a final assembled genome size of 1013.2 Mb and a contig N50 of 3.3 Mb.
Min Xie   +29 more
openaire   +5 more sources

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