Results 41 to 50 of about 5,571,829 (332)

The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae. [PDF]

open access: yes, 2017
A reference genome sequence for Pseudotsuga menziesii var. menziesii (Mirb.) Franco (Coastal Douglas-fir) is reported, thus providing a reference sequence for a third genus of the family Pinaceae.
Cardeno, Charis   +21 more
core   +2 more sources

The GIAB genomic stratifications resource for human reference genomes

open access: yesNature Communications, 2023
Abstract Despite the growing variety of sequencing and variant-calling tools, no workflow performs equally well across the entire human genome. Understanding context-dependent performance is critical for enabling researchers, clinicians, and developers to make informed tradeoffs when selecting sequencing hardware ...
Nathan Dwarshuis   +13 more
openaire   +5 more sources

Genomic surveillance of methicillin-resistant Staphylococcus aureus in the Philippines, 2013–2014

open access: yesWestern Pacific Surveillance and Response, 2021
Methicillin-resistant Staphylococcus aureus (MRSA) remains one of the leading causes of both nosocomial and community infections worldwide. In the Philippines, MRSA rates have remained above 50% since 2010, but resistance to other antibiotics, including ...
Melissa L. Masim   +15 more
doaj   +1 more source

Evaluating the role of reference-genome phylogenetic distance on evolutionary inference

open access: yesbioRxiv, 2021
When a high-quality genome assembly of a target species is unavailable, an option to avoid the costly de novo assembly process is a mapping-based assembly.
Aparna Prasad, E. Lorenzen, M. Westbury
semanticscholar   +1 more source

REAPR: a universal tool for genome assembly evaluation. [PDF]

open access: yes, 2013
Methods to reliably assess the accuracy of genome sequence data are lacking. Currently completeness is only described qualitatively and mis-assemblies are overlooked.
Berriman, Matthew   +5 more
core   +2 more sources

A new reference genome assembly for the microcrustacean Daphnia pulex [PDF]

open access: yes, 2017
Comparing genomes of closely related genotypes from populations with distinct demographic histories can help reveal the impact of effective population size on genome evolution. For this purpose, we present a high quality genome assembly of Daphnia pulex (
Ackerman, Matthew S   +12 more
core   +6 more sources

Genomic surveillance of Pseudomonas aeruginosa in the Philippines, 2013-2014

open access: yesWestern Pacific Surveillance and Response, 2021
Pseudomonas aeruginosa is an opportunistic pathogen that often causes nosocomial infections resistant to treatment. Rates of antimicrobial resistance (AMR) are increasing, as are rates of multidrug-resistant (MDR) and possible extensively drug-resistant (
Jeremiah Chilam   +16 more
doaj   +1 more source

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

open access: yesbioRxiv, 2021
Saccharomyces cerevisiae is used to provide fundamental understanding of eukaryotic genetics, gene product function, and cellular biological processes.
S. Engel   +11 more
semanticscholar   +1 more source

Ten years of the horse reference genome: insights into equine biology, domestication and population dynamics in the post-genome era. [PDF]

open access: yes, 2019
The horse reference genome from the Thoroughbred mare Twilight has been available for a decade and, together with advances in genomics technologies, has led to unparalleled developments in equine genomics.
Bellone, R   +3 more
core   +2 more sources

Assessing Diversity in the Camelina Genus Provides Insights into the Genome Structure of Camelina sativa

open access: yesG3: Genes, Genomes, Genetics, 2020
Camelina sativa (L.) Crantz an oilseed crop of the Brassicaceae family is gaining attention due to its potential as a source of high value oil for food, feed or fuel. The hexaploid domesticated C.
Raju Chaudhary   +9 more
doaj   +1 more source

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