Results 51 to 60 of about 5,571,829 (332)
Ocean Genomes: reference genome resources for marine vertebrates. [PDF]
NPJ BiodiversAbstract We present Ocean Genomes, a program dedicated to producing reference genome resources to facilitate improved monitoring approaches and management outcomes for marine vertebrate biodiversity. Ocean Genomes will generate high-quality reference genomes of representatives of all marine vertebrate families and additional high-conservation-
Parata L +13 more
europepmc +2 more sources
Improved Reference Genome Annotation of Brassica rapa by Pacific Biosciences RNA Sequencing
Frontiers in Plant Science, 2022 The species Brassica rapa includes several important vegetable crops. The draft reference genome of B. rapa ssp. pekinensis was completed in 2011, and it has since been updated twice. The pangenome with structural variations of 18 B.
Zhicheng Zhang +8 more
semanticscholar +1 more source
RECORD: Reference-Assisted Genome Assembly for Closely Related Genomes [PDF]
International Journal of Genomics, 2015 Background. Next-generation sequencing technologies are now producing multiple times the genome size in total reads from a single experiment. This is enough information to reconstruct at least some of the differences between the individual genome studied in the experiment and the reference genome of the species. However, in most typical protocols, this
Krisztian Buza +2 more
openaire +3 more sources
A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome
bioRxiv, 2022 H37Rv is the most widely used M. tuberculosis strain. Its genome is globally used as the M. tuberculosis reference sequence. We developed Bact-Builder, a pipeline that leverages consensus building to generate complete and highly accurate gap-closed ...
Poonam Chitale +11 more
semanticscholar +1 more source
GBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data [PDF]
, 2016 Background: With its simple library preparation and robust approach to genome reduction, genotyping-by-sequencing (GBS) is a flexible and cost-effective strategy for SNP discovery and genotyping, provided an appropriate reference genome is available. For
Bartaula, Radhika +2 more
core +2 more sources
Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome
bioRxiv, 2021 The domestic dog has evolved to be an important biomedical model for studies regarding the genetic basis of disease, morphology and behavior. Genetic studies in the dog have relied on a draft reference genome of a purebred female boxer dog named “Tasha ...
V. Jagannathan +13 more
semanticscholar +1 more source
Plants, 2023 Caryopteris x Clandonensis, also known as bluebeard, is an ornamental plant containing a large variety of terpenes and terpene-like compounds. Four different cultivars were subjected to a principal component analysis to elucidate variations in terpenoid ...
Manfred Ritz +3 more
doaj +1 more source
A high-continuity and annotated tomato reference genome
BMC Genomics, 2021 Genetic and functional genomics studies require a high-quality genome assembly. Tomato (Solanum lycopersicum), an important horticultural crop, is an ideal model species for the study of fruit development.
Xiao Su +11 more
semanticscholar +1 more source
FreePSI: an alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome. [PDF]
, 2017 Alternative splicing plays an important role in many cellular processes of eukaryotic organisms. The exon-inclusion ratio, also known as percent spliced in, is often regarded as one of the most effective measures of alternative splicing events.
Jiang, Tao +4 more
core +1 more source
G3: Genes, Genomes, Genetics, 2017 Genetic variation in natural populations represents the raw material for phenotypic diversity. Species-wide characterization of genetic variants is crucial to have a deeper insight into the genotype-phenotype relationship.
Téo Fournier +8 more
doaj +1 more source